Cow genome map
| Conread name: | Ss1.1-rcbr0_006154.5 |
| Conread position: | 1-169 |
| Cow position: | chr23:16664535-16664703 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-231 |
| Cow position: | chr23:2487957-2488173 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 14, 18 |
| Conread position: | 1-231 |
| Cow position: | chr23:3394465-3394685 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 1-234 |
| Cow position: | chr23:1290332-1290102 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 24, 61 |
| Conread position: | 1-234 |
| Cow position: | chr23:5707028-5706809 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 24, 68 |
| Conread position: | 1-234 |
| Cow position: | chr23:39753153-39752923 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 8, 78 |
| Conread position: | 1-237 |
| Cow position: | chr23:534262-534035 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 64, 14 |
| Conread position: | 1-237 |
| Cow position: | chr23:5426468-5426233 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 24, 166 |
| Conread position: | 1-237 |
| Cow position: | chr23:29626451-29626220 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 14, 176 |
| Conread position: | 1-241 |
| Cow position: | chr23:1720948-1721182 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 66, 89 |
| Conread position: | 1-241 |
| Cow position: | chr23:6367645-6367407 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 24, 142 |
| Conread position: | 1-241 |
| Cow position: | chr23:7845328-7845091 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 193 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 1-241 |
| Cow position: | chr23:16881128-16881355 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-241 |
| Cow position: | chr23:18902017-18902249 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 14, 58 |
| Conread position: | 1-241 |
| Cow position: | chr23:20744558-20744787 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 26, 64 |
| Conread position: | 1-241 |
| Cow position: | chr23:26986236-26986472 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 24, 168 |
| Conread position: | 1-241 |
| Cow position: | chr23:29459064-29459287 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-242 |
| Cow position: | chr23:670654-670421 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 24, 71 |
| Conread position: | 1-242 |
| Cow position: | chr23:5451353-5451122 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 84, 14 |
| Conread position: | 1-242 |
| Cow position: | chr23:20056829-20057066 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 2-169 |
| Cow position: | chr23:12363584-12363755 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 18, 13 |
| Conread position: | 2-234 |
| Cow position: | chr23:14164364-14164591 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 18, 13 |
| Conread position: | 2-234 |
| Cow position: | chr23:24930038-24930264 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 63 |
| Conread position: | 2-241 |
| Cow position: | chr23:4980512-4980742 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 99, 73 |
| Conread position: | 3-241 |
| Cow position: | chr23:40781364-40781128 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 17, 58 |
| Conread position: | 4-234 |
| Cow position: | chr23:1883427-1883202 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 16, 169 |
| Conread position: | 5-205 |
| Cow position: | chr23:17404870-17404669 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 20, 57 |
| Conread position: | 5-223 |
| Cow position: | chr23:3282091-3282295 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 72 |
| Conread position: | 5-240 |
| Cow position: | chr23:21764953-21764720 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 11, 164 |
| Conread position: | 5-241 |
| Cow position: | chr23:4504861-4504629 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 20, 39 |
| Conread position: | 5-241 |
| Cow position: | chr23:24867340-24867104 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 15, 10 |
| Conread position: | 5-242 |
| Cow position: | chr23:11045518-11045285 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 15, 10 |
| Conread position: | 7-236 |
| Cow position: | chr23:24509723-24509508 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 18, 52 |
| Conread position: | 8-241 |
| Cow position: | chr23:38455150-38455383 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 170 |
| Conread position: | 8-242 |
| Cow position: | chr23:39806901-39806673 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 12, 142 |
| Conread position: | 14-241 |
| Cow position: | chr23:3262472-3262697 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 48 |
| Conread position: | 14-241 |
| Cow position: | chr23:39775751-39775532 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 10, 61 |
| Conread position: | 15-241 |
| Cow position: | chr23:10553987-10554210 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 5, 156 |
| Conread position: | 18-158 |
| Cow position: | chr23:5795497-5795352 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 43 |
| Conread position: | 18-232 |
| Cow position: | chr23:26632822-26632610 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 9, 45 |
| Conread position: | 18-234 |
| Cow position: | chr23:29034336-29034122 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 7, 148 |
| Conread position: | 18-241 |
| Cow position: | chr23:15056624-15056840 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 87, 149 |
| Conread position: | 19-233 |
| Cow position: | chr23:34356659-34356443 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 5, 56 |
| Conread position: | 19-239 |
| Cow position: | chr23:29242966-29242750 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 5, 59 |
| Conread position: | 19-241 |
| Cow position: | chr23:13599359-13599143 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 5, 42 |
| Conread position: | 20-242 |
| Cow position: | chr23:14191570-14191350 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 5, 52 |
| Conread position: | 22-233 |
| Cow position: | chr23:2501841-2502039 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 80, 53 |
| Conread position: | 22-234 |
| Cow position: | chr23:15287125-15287325 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 122, 38 |
| Conread position: | 22-241 |
| Cow position: | chr23:1776621-1776829 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 22-241 |
| Cow position: | chr23:2055717-2055504 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 68, 136 |
| Conread position: | 22-241 |
| Cow position: | chr23:22399422-22399203 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 22-241 |
| Cow position: | chr23:33717528-33717742 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 40, 11 |
| Conread position: | 22-242 |
| Cow position: | chr23:21452717-21452932 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 50, 36 |
| Conread position: | 22-244 |
| Cow position: | chr23:2282166-2282379 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 77, 38 |
| Conread position: | 23-241 |
| Cow position: | chr23:1923825-1924034 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 21 |
| Conread position: | 24-232 |
| Cow position: | chr23:1885162-1885365 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 63, 138 |
| Conread position: | 24-232 |
| Cow position: | chr23:38208737-38208521 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 25-233 |
| Cow position: | chr23:21446129-21445926 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 81, 36 |
| Conread position: | 26-240 |
| Cow position: | chr23:9268592-9268392 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 26-241 |
| Cow position: | chr23:4646521-4646315 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 36 |
| Conread position: | 28-234 |
| Cow position: | chr23:4338604-4338798 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 30-241 |
| Cow position: | chr23:2259586-2259798 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 9, 146 |
| Conread position: | 38-241 |
| Cow position: | chr23:11473509-11473705 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 34, 94 |
| Conread position: | 43-234 |
| Cow position: | chr23:6244596-6244778 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 48-237 |
| Cow position: | chr23:1585400-1585583 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 57, 32 |
| Conread position: | 51-233 |
| Cow position: | chr23:344190-344368 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 47, 11 |
| Conread position: | 62-241 |
| Cow position: | chr23:2457437-2457264 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 66-241 |
| Cow position: | chr23:1877903-1878069 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 29, 54 |
| Conread position: | 90-234 |
| Cow position: | chr23:20437617-20437754 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 95-233 |
| Cow position: | chr23:22530477-22530608 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 97-234 |
| Cow position: | chr23:37065778-37065646 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 73 |
| Conread position: | 97-241 |
| Cow position: | chr23:18296744-18296609 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 97-253 |
| Cow position: | chr23:30999514-30999365 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 98-242 |
| Cow position: | chr23:41348710-41348848 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 113-241 |
| Cow position: | chr23:8698367-8698245 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 8, 49 |
| Conread position: | 113-242 |
| Cow position: | chr23:5395503-5395624 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
Show alignments to all cow chromosomes.