Cow genome map
| Conread name: | Ss1.1-rcbr0_006154.5 |
| Conread position: | 1-169 |
| Cow position: | chr24:18357044-18357216 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 18, 14 |
| Conread position: | 1-169 |
| Cow position: | chr24:37037908-37037736 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 148 |
| Conread position: | 1-210 |
| Cow position: | chr24:30897528-30897735 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 157 |
| Conread position: | 1-231 |
| Cow position: | chr24:29063650-29063860 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 31 |
| Conread position: | 1-231 |
| Cow position: | chr24:43028322-43028540 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 24, 14 |
| Conread position: | 1-232 |
| Cow position: | chr24:36404134-36404363 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 24, 60 |
| Conread position: | 1-233 |
| Cow position: | chr24:33221932-33222156 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 160 |
| Conread position: | 1-234 |
| Cow position: | chr24:2402360-2402593 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-236 |
| Cow position: | chr24:24491009-24491229 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 14, 19 |
| Conread position: | 1-241 |
| Cow position: | chr24:3430741-3430511 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 1-241 |
| Cow position: | chr24:5754844-5754617 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-241 |
| Cow position: | chr24:11887168-11886933 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 26, 69 |
| Conread position: | 1-241 |
| Cow position: | chr24:15246635-15246859 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 1-241 |
| Cow position: | chr24:17104562-17104790 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 24, 58 |
| Conread position: | 1-241 |
| Cow position: | chr24:17955436-17955671 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 23, 73 |
| Conread position: | 1-241 |
| Cow position: | chr24:18024963-18025196 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 22, 14 |
| Conread position: | 1-241 |
| Cow position: | chr24:19465909-19466158 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 1-241 |
| Cow position: | chr24:20024621-20024383 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 1-241 |
| Cow position: | chr24:27608090-27608322 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 24, 127 |
| Conread position: | 1-241 |
| Cow position: | chr24:31816586-31816361 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 105 |
| Conread position: | 1-241 |
| Cow position: | chr24:33153784-33153558 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 17 |
| Conread position: | 1-241 |
| Cow position: | chr24:33372563-33372326 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 20, 8 |
| Conread position: | 1-241 |
| Cow position: | chr24:35675547-35675319 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 1-241 |
| Cow position: | chr24:37650682-37650446 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 1-242 |
| Cow position: | chr24:5141950-5141715 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 22, 39 |
| Conread position: | 1-244 |
| Cow position: | chr24:39833507-39833743 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 24, 60 |
| Conread position: | 1-245 |
| Cow position: | chr24:31324293-31324051 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 19, 9 |
| Conread position: | 1-252 |
| Cow position: | chr24:10499223-10498974 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 15, 123 |
| Conread position: | 2-169 |
| Cow position: | chr24:1269793-1269635 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 17, 13 |
| Conread position: | 2-233 |
| Cow position: | chr24:6487926-6487704 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 13, 18 |
| Conread position: | 2-240 |
| Cow position: | chr24:20874689-20874453 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 18, 13 |
| Conread position: | 2-241 |
| Cow position: | chr24:35794728-35794964 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 18, 13 |
| Conread position: | 5-220 |
| Cow position: | chr24:6131865-6132080 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 20, 167 |
| Conread position: | 5-236 |
| Cow position: | chr24:31359325-31359103 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 18, 54 |
| Conread position: | 5-241 |
| Cow position: | chr24:17860254-17860475 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 14 |
| Conread position: | 6-234 |
| Cow position: | chr24:6102833-6102605 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 143 |
| Conread position: | 6-234 |
| Cow position: | chr24:27906441-27906217 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 9, 57 |
| Conread position: | 7-234 |
| Cow position: | chr24:24457250-24457464 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 133, 15 |
| Conread position: | 7-237 |
| Cow position: | chr24:39841843-39842073 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 12, 8 |
| Conread position: | 14-234 |
| Cow position: | chr24:29595815-29596033 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 10, 5 |
| Conread position: | 14-241 |
| Cow position: | chr24:30314030-30314260 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 6, 79 |
| Conread position: | 18-241 |
| Cow position: | chr24:28062940-28062721 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 9, 31 |
| Conread position: | 18-241 |
| Cow position: | chr24:30235864-30235645 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 5, 100 |
| Conread position: | 19-234 |
| Cow position: | chr24:28721879-28721670 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 5, 46 |
| Conread position: | 19-240 |
| Cow position: | chr24:31812179-31811961 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 5, 152 |
| Conread position: | 19-241 |
| Cow position: | chr24:29782155-29781937 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 5, 42 |
| Conread position: | 19-241 |
| Cow position: | chr24:39218850-39219071 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 5, 149 |
| Conread position: | 22-234 |
| Cow position: | chr24:211973-211764 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 75, 138 |
| Conread position: | 22-234 |
| Cow position: | chr24:24250717-24250515 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 35, 146 |
| Conread position: | 22-234 |
| Cow position: | chr24:39226983-39226781 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 84, 38 |
| Conread position: | 22-241 |
| Cow position: | chr24:30178227-30178012 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 148 |
| Conread position: | 22-242 |
| Cow position: | chr24:201651-201860 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 43, 96 |
| Conread position: | 22-246 |
| Cow position: | chr24:43371230-43371018 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 68, 49 |
| Conread position: | 23-241 |
| Cow position: | chr24:18485009-18485224 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 56, 144 |
| Conread position: | 23-242 |
| Cow position: | chr24:32204810-32205019 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 23-260 |
| Cow position: | chr24:40184609-40184379 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 30, 11 |
| Conread position: | 25-234 |
| Cow position: | chr24:11876871-11876666 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 42, 143 |
| Conread position: | 26-231 |
| Cow position: | chr24:27941031-27941224 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 69, 35 |
| Conread position: | 26-240 |
| Cow position: | chr24:7001084-7001291 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 84, 36 |
| Conread position: | 26-241 |
| Cow position: | chr24:28496600-28496811 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 40, 145 |
| Conread position: | 26-241 |
| Cow position: | chr24:39483460-39483249 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 79, 47 |
| Conread position: | 31-242 |
| Cow position: | chr24:11734700-11734497 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 33, 88 |
| Conread position: | 33-242 |
| Cow position: | chr24:7913981-7913773 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 68, 136 |
| Conread position: | 36-241 |
| Cow position: | chr24:26928972-26929173 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 66, 26 |
| Conread position: | 36-241 |
| Cow position: | chr24:40130100-40129898 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 63, 40 |
| Conread position: | 37-230 |
| Cow position: | chr24:10125845-10125648 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 41, 25 |
| Conread position: | 42-241 |
| Cow position: | chr24:32360553-32360752 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 71, 131 |
| Conread position: | 63-234 |
| Cow position: | chr24:18374723-18374557 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 100 |
| Conread position: | 90-237 |
| Cow position: | chr24:29539992-29540131 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 97-241 |
| Cow position: | chr24:31388441-31388310 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 101-263 |
| Cow position: | chr24:28332366-28332534 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 105-236 |
| Cow position: | chr24:18474844-18474968 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 107-267 |
| Cow position: | chr24:25194168-25194015 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 135, 64 |
Show alignments to all cow chromosomes.