Cow genome map
| Conread name: | Ss1.1-rcbr0_006154.5 |
| Conread position: | 1-167 |
| Cow position: | chr25:24051996-24051824 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-199 |
| Cow position: | chr25:26679256-26679064 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 26, 60 |
| Conread position: | 1-226 |
| Cow position: | chr25:4681261-4681046 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 24, 39 |
| Conread position: | 1-232 |
| Cow position: | chr25:11661788-11662013 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 22, 58 |
| Conread position: | 1-232 |
| Cow position: | chr25:14720774-14720559 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 68 |
| Conread position: | 1-233 |
| Cow position: | chr25:12097870-12097648 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 14, 19 |
| Conread position: | 1-233 |
| Cow position: | chr25:26089783-26090008 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-233 |
| Cow position: | chr25:33457762-33457512 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-233 |
| Cow position: | chr25:36081905-36081679 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 98, 16 |
| Conread position: | 1-234 |
| Cow position: | chr25:6683032-6683256 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 26, 165 |
| Conread position: | 1-234 |
| Cow position: | chr25:19679385-19679147 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 1-234 |
| Cow position: | chr25:35347934-35347709 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-236 |
| Cow position: | chr25:6961123-6961347 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 24, 83 |
| Conread position: | 1-237 |
| Cow position: | chr25:16319110-16319330 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-241 |
| Cow position: | chr25:3992816-3992588 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 26, 106 |
| Conread position: | 1-241 |
| Cow position: | chr25:10407384-10407620 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 65 |
| Conread position: | 1-241 |
| Cow position: | chr25:11585548-11585316 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-241 |
| Cow position: | chr25:15254318-15254533 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 24, 57 |
| Conread position: | 1-241 |
| Cow position: | chr25:15319950-15319718 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 23, 83 |
| Conread position: | 1-241 |
| Cow position: | chr25:19129885-19129651 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 22, 68 |
| Conread position: | 1-241 |
| Cow position: | chr25:19478705-19478486 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 1-241 |
| Cow position: | chr25:22178947-22178719 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 62 |
| Conread position: | 1-241 |
| Cow position: | chr25:22315235-22314999 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 14, 174 |
| Conread position: | 1-241 |
| Cow position: | chr25:30279178-30279409 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 14, 111 |
| Conread position: | 1-241 |
| Cow position: | chr25:33550539-33550303 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 26, 68 |
| Conread position: | 1-242 |
| Cow position: | chr25:21191519-21191284 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-245 |
| Cow position: | chr25:6474057-6474306 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 23, 156 |
| Conread position: | 2-237 |
| Cow position: | chr25:36746419-36746644 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 22, 56 |
| Conread position: | 2-240 |
| Cow position: | chr25:22531310-22531086 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 13, 20 |
| Conread position: | 2-241 |
| Cow position: | chr25:20785557-20785786 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 22, 51 |
| Conread position: | 2-241 |
| Cow position: | chr25:21192901-21193146 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 2-241 |
| Cow position: | chr25:25051349-25051586 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 75 |
| Conread position: | 3-241 |
| Cow position: | chr25:20211048-20211288 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 12, 78 |
| Conread position: | 6-169 |
| Cow position: | chr25:11054927-11054764 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 98, 14 |
| Conread position: | 6-234 |
| Cow position: | chr25:36036754-36036975 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 14, 9 |
| Conread position: | 7-228 |
| Cow position: | chr25:18905907-18905692 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 92, 17 |
| Conread position: | 7-241 |
| Cow position: | chr25:21245581-21245809 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 8-233 |
| Cow position: | chr25:20069745-20069526 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 11, 52 |
| Conread position: | 14-241 |
| Cow position: | chr25:36033456-36033234 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 6, 35 |
| Conread position: | 14-249 |
| Cow position: | chr25:3145864-3145629 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 56 |
| Conread position: | 17-234 |
| Cow position: | chr25:22203671-22203885 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 16, 55 |
| Conread position: | 18-234 |
| Cow position: | chr25:15714886-15714686 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 7, 58 |
| Conread position: | 18-241 |
| Cow position: | chr25:9642371-9642152 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 9, 136 |
| Conread position: | 18-241 |
| Cow position: | chr25:20023373-20023595 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 9, 138 |
| Conread position: | 19-241 |
| Cow position: | chr25:13272581-13272367 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 5, 66 |
| Conread position: | 19-241 |
| Cow position: | chr25:26087531-26087313 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 5, 135 |
| Conread position: | 22-233 |
| Cow position: | chr25:7750460-7750256 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 22-234 |
| Cow position: | chr25:7641443-7641649 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 6 |
| Conread position: | 22-234 |
| Cow position: | chr25:8120791-8120581 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 77, 67 |
| Conread position: | 22-234 |
| Cow position: | chr25:35340338-35340137 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 46, 117 |
| Conread position: | 22-241 |
| Cow position: | chr25:14791765-14791550 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 57, 143 |
| Conread position: | 22-241 |
| Cow position: | chr25:40388456-40388660 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 23-230 |
| Cow position: | chr25:8918269-8918466 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 23-233 |
| Cow position: | chr25:5515021-5514812 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 42, 151 |
| Conread position: | 23-241 |
| Cow position: | chr25:15377334-15377131 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 56, 143 |
| Conread position: | 23-241 |
| Cow position: | chr25:16921790-16921996 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 25-241 |
| Cow position: | chr25:31732729-31732938 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 80, 37 |
| Conread position: | 25-242 |
| Cow position: | chr25:5836960-5837169 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 80, 17 |
| Conread position: | 26-169 |
| Cow position: | chr25:12609347-12609204 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-234 |
| Cow position: | chr25:10330408-10330597 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 53, 34 |
| Conread position: | 26-241 |
| Cow position: | chr25:7329553-7329342 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 26-242 |
| Cow position: | chr25:26238862-26238668 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 27-242 |
| Cow position: | chr25:7801144-7800933 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 78, 95 |
| Conread position: | 35-234 |
| Cow position: | chr25:12899754-12899559 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 36, 23 |
| Conread position: | 36-231 |
| Cow position: | chr25:17342452-17342257 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 36-234 |
| Cow position: | chr25:20133320-20133510 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 46, 25 |
| Conread position: | 36-241 |
| Cow position: | chr25:15694976-15694782 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 36, 26 |
| Conread position: | 41-234 |
| Cow position: | chr25:8347500-8347314 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 56, 113 |
| Conread position: | 41-234 |
| Cow position: | chr25:14196850-14196661 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 64, 35 |
| Conread position: | 42-243 |
| Cow position: | chr25:2624798-2624601 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 27, 118 |
| Conread position: | 48-232 |
| Cow position: | chr25:32453412-32453591 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 14, 115 |
| Conread position: | 52-234 |
| Cow position: | chr25:12778556-12778727 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 52-241 |
| Cow position: | chr25:28187966-28188151 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 47, 97 |
| Conread position: | 59-240 |
| Cow position: | chr25:1735344-1735517 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 89-257 |
| Cow position: | chr25:17704693-17704530 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 56, 83 |
| Conread position: | 101-241 |
| Cow position: | chr25:20461054-20460921 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 110-241 |
| Cow position: | chr25:18934954-18935076 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.