Cow genome map

Conread name: Ss1.1-rcbr0_006154.5

Conread position: 1-168
Cow position: chr27:23510911-23511084 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 19, 14

Conread position: 1-177
Cow position: chr27:16103731-16103910 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 24, 67

Conread position: 1-225
Cow position: chr27:20789455-20789239 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 170
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 24, 157

Conread position: 1-227
Cow position: chr27:16589778-16589570 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 19, 14

Conread position: 1-234
Cow position: chr27:22035453-22035224 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 172
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 22, 173

Conread position: 1-234
Cow position: chr27:22171221-22171448 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 171
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 24, 173

Conread position: 1-234
Cow position: chr27:25379913-25380140 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 168
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 19, 172

Conread position: 1-234
Cow position: chr27:27460648-27460422 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 19, 57

Conread position: 1-236
Cow position: chr27:19387942-19388170 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 178
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 19, 14

Conread position: 1-237
Cow position: chr27:21669193-21668972 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 173
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 24, 53

Conread position: 1-238
Cow position: chr27:426893-427126 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 168
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 24, 60

Conread position: 1-241
Cow position: chr27:299457-299227 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 173
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 14, 58

Conread position: 1-241
Cow position: chr27:4672937-4673177 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 189
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 15, 164

Conread position: 1-241
Cow position: chr27:6499985-6500221 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 172
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 23, 59

Conread position: 1-241
Cow position: chr27:14670458-14670224 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 182
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 19, 14

Conread position: 1-241
Cow position: chr27:16284399-16284629 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 173
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 24, 76

Conread position: 1-241
Cow position: chr27:17397530-17397290 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 183
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 22, 177

Conread position: 1-241
Cow position: chr27:23472180-23472412 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 161
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 24, 62

Conread position: 1-241
Cow position: chr27:26509234-26509000 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 163
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 19, 33

Conread position: 1-241
Cow position: chr27:28206722-28206954 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 183
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 19, 90

Conread position: 1-241
Cow position: chr27:28496448-28496218 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 170
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 14, 22

Conread position: 1-242
Cow position: chr27:4835682-4835450 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 169
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 26, 107

Conread position: 1-242
Cow position: chr27:24321110-24321347 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 177
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 22, 69

Conread position: 1-247
Cow position: chr27:20068051-20067815 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 173
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 70, 16

Conread position: 2-182
Cow position: chr27:16625822-16626003 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 18, 13

Conread position: 2-209
Cow position: chr27:20758113-20757919 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 42

Conread position: 2-234
Cow position: chr27:30407115-30406882 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 164
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 14, 174

Conread position: 3-234
Cow position: chr27:18593195-18593420 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 166
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 21, 89

Conread position: 3-241
Cow position: chr27:24446231-24446000 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 182
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 12, 55

Conread position: 4-263
Cow position: chr27:1122958-1123216 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 191
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 19, 50

Conread position: 5-241
Cow position: chr27:154291-154525 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 22, 163

Conread position: 5-241
Cow position: chr27:15409108-15408887 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 20, 110

Conread position: 5-241
Cow position: chr27:26424658-26424429 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 178
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 10, 14

Conread position: 5-242
Cow position: chr27:21408635-21408395 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 166
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 19, 60

Conread position: 6-209
Cow position: chr27:22569713-22569898 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 17, 34

Conread position: 6-234
Cow position: chr27:19685784-19685565 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 174
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 17, 9

Conread position: 6-241
Cow position: chr27:4812954-4812720 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 181
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 14, 9

Conread position: 7-241
Cow position: chr27:815292-815521 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 179
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 13, 43

Conread position: 7-260
Cow position: chr27:29431394-29431638 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 181
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 18, 55

Conread position: 8-241
Cow position: chr27:13251945-13252166 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 161
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 82, 16

Conread position: 11-234
Cow position: chr27:13875664-13875884 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 51, 13

Conread position: 11-234
Cow position: chr27:14902720-14902499 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 9, 50

Conread position: 14-234
Cow position: chr27:16871977-16871766 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 162
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 48, 8

Conread position: 14-234
Cow position: chr27:26865182-26864969 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 6, 42

Conread position: 14-242
Cow position: chr27:26428198-26427971 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 165
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 13, 163

Conread position: 14-242
Cow position: chr27:30354408-30354186 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 162
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 6, 58

Conread position: 16-234
Cow position: chr27:30988738-30988947 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 158
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 83, 8

Conread position: 17-241
Cow position: chr27:22418829-22418608 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 56, 45

Conread position: 18-240
Cow position: chr27:28061820-28061609 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 164
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 7, 66

Conread position: 18-241
Cow position: chr27:8353417-8353633 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 163
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 7, 51

Conread position: 18-241
Cow position: chr27:20641394-20641190 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 164
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 7, 41

Conread position: 18-241
Cow position: chr27:27449493-27449278 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 75, 128

Conread position: 19-241
Cow position: chr27:27641070-27640835 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 167
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 5, 162

Conread position: 19-241
Cow position: chr27:27844056-27843836 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 5, 41

Conread position: 19-242
Cow position: chr27:2957347-2957565 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 157
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 5, 45

Conread position: 19-246
Cow position: chr27:1498258-1498476 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 166
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 59, 49

Conread position: 20-241
Cow position: chr27:24477360-24477573 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 157
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 5, 29

Conread position: 21-216
Cow position: chr27:9697721-9697912 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 43, 153

Conread position: 22-169
Cow position: chr27:30804286-30804435 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 110
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 77, 40

Conread position: 22-233
Cow position: chr27:23483170-23483371 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 46, 40

Conread position: 22-234
Cow position: chr27:30890237-30890440 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 69, 27

Conread position: 22-241
Cow position: chr27:15454154-15454368 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 171
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 43, 150

Conread position: 22-241
Cow position: chr27:15668825-15668610 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 164
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 81, 67

Conread position: 22-241
Cow position: chr27:24014793-24014584 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 151
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 87, 150

Conread position: 23-239
Cow position: chr27:30868793-30868584 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 75, 53

Conread position: 23-245
Cow position: chr27:23882427-23882213 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 151
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 127, 49

Conread position: 23-265
Cow position: chr27:22268448-22268686 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 177
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 79, 41

Conread position: 24-226
Cow position: chr27:17331444-17331644 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 156
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 46, 147

Conread position: 25-241
Cow position: chr27:9090850-9090645 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 158
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 73, 14

Conread position: 25-241
Cow position: chr27:15643122-15643332 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 80, 33

Conread position: 26-232
Cow position: chr27:30792987-30792789 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 74, 18

Conread position: 26-234
Cow position: chr27:26150970-26151169 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 45, 34

Conread position: 26-241
Cow position: chr27:16513924-16513725 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 107, 16

Conread position: 26-242
Cow position: chr27:25411571-25411362 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 62, 28

Conread position: 31-241
Cow position: chr27:26426162-26426365 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 146
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 73, 31

Conread position: 33-241
Cow position: chr27:15859132-15858934 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 160
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 34, 26

Conread position: 34-239
Cow position: chr27:6058462-6058657 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 146
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 36-241
Cow position: chr27:4805946-4805751 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 146
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 41, 25

Conread position: 36-241
Cow position: chr27:16786789-16786983 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 113, 28

Conread position: 38-241
Cow position: chr27:27020144-27019944 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 58, 124

Conread position: 50-234
Cow position: chr27:27055547-27055727 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 53, 25

Conread position: 54-234
Cow position: chr27:7412361-7412532 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 81, 51

Conread position: 75-242
Cow position: chr27:8629876-8629714 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 24, 99

Conread position: 76-242
Cow position: chr27:12429402-12429566 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 134, 74

Conread position: 79-241
Cow position: chr27:19717925-19718080 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 23, 79

Conread position: 97-233
Cow position: chr27:22547385-22547256 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 74, 0

Conread position: 101-241
Cow position: chr27:16620015-16620148 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 112-241
Cow position: chr27:26322388-26322510 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 113-241
Cow position: chr27:6674276-6674397 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 5, 0

Show alignments to all cow chromosomes.