Cow genome map

Conread name: Ss1.1-rcbr0_006154.5

Conread position: 1-152
Cow position: chr28:25128924-25128767 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 1-169
Cow position: chr28:2960793-2960965 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 134
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 14, 71

Conread position: 1-188
Cow position: chr28:8140519-8140328 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 19, 14

Conread position: 1-195
Cow position: chr28:2872956-2872760 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 14, 18

Conread position: 1-232
Cow position: chr28:2862905-2862676 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 181
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 19, 14

Conread position: 1-232
Cow position: chr28:3492747-3492969 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 17

Conread position: 1-234
Cow position: chr28:4884219-4884454 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 176
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 24, 119

Conread position: 1-234
Cow position: chr28:7549021-7549250 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 174
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 26, 68

Conread position: 1-234
Cow position: chr28:9285333-9285565 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 23, 62

Conread position: 1-234
Cow position: chr28:26685154-26684925 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 165
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 19, 14

Conread position: 1-234
Cow position: chr28:33884439-33884220 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 167
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 14, 21

Conread position: 1-235
Cow position: chr28:4588137-4587907 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 19, 14

Conread position: 1-236
Cow position: chr28:29416679-29416906 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 177
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 22, 70

Conread position: 1-237
Cow position: chr28:4834807-4835036 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 180
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 26, 85

Conread position: 1-237
Cow position: chr28:5437048-5437282 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 171
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 22, 161

Conread position: 1-240
Cow position: chr28:16370046-16370268 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 183
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 19, 14

Conread position: 1-241
Cow position: chr28:2737769-2738006 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 166
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 24, 68

Conread position: 1-241
Cow position: chr28:3023876-3024106 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 168
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 14, 18

Conread position: 1-241
Cow position: chr28:3256835-3256599 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 185
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 24, 54

Conread position: 1-241
Cow position: chr28:4158992-4158757 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 169
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 26, 74

Conread position: 1-241
Cow position: chr28:5684740-5684515 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 177
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 14, 18

Conread position: 1-241
Cow position: chr28:8787577-8787352 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 181
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 19, 14

Conread position: 1-241
Cow position: chr28:10745251-10745015 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 169
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 20, 14

Conread position: 1-241
Cow position: chr28:11884484-11884717 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 186
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 24, 47

Conread position: 1-241
Cow position: chr28:12946986-12946743 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 167
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 28, 14

Conread position: 1-241
Cow position: chr28:13474337-13474111 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 176
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 19, 14

Conread position: 1-241
Cow position: chr28:14998104-14997867 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 173
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 22, 62

Conread position: 1-241
Cow position: chr28:16204297-16204527 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 24, 58

Conread position: 1-241
Cow position: chr28:16346494-16346721 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 172
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 19, 14

Conread position: 1-241
Cow position: chr28:16919131-16919356 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 173
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 19, 14

Conread position: 1-241
Cow position: chr28:20124821-20124591 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 178
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 19, 14

Conread position: 1-241
Cow position: chr28:22346058-22345824 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 179
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 24, 169

Conread position: 1-241
Cow position: chr28:25596668-25596438 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 168
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 24, 115

Conread position: 1-241
Cow position: chr28:28164125-28163897 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 181
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 25, 14

Conread position: 1-242
Cow position: chr28:9636420-9636652 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 177
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 24, 58

Conread position: 1-244
Cow position: chr28:15043824-15044056 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 182
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 24, 159

Conread position: 1-252
Cow position: chr28:21598215-21598460 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 184
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 19, 14

Conread position: 1-287
Cow position: chr28:2131887-2132164 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 177
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 24, 54

Conread position: 2-234
Cow position: chr28:3746234-3746014 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 174
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 16, 58

Conread position: 2-239
Cow position: chr28:30937632-30937859 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 175
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 25, 16

Conread position: 2-241
Cow position: chr28:5904768-5904541 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 177
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 23, 42

Conread position: 2-241
Cow position: chr28:11752103-11752339 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 182
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 23, 161

Conread position: 3-187
Cow position: chr28:11079341-11079155 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 94, 8

Conread position: 3-233
Cow position: chr28:4016566-4016341 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 166
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 22, 56

Conread position: 3-241
Cow position: chr28:2905610-2905386 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 173
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 22, 85

Conread position: 3-241
Cow position: chr28:18591306-18591075 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 180
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 22, 60

Conread position: 5-241
Cow position: chr28:7751267-7751495 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 169
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 20, 65

Conread position: 5-241
Cow position: chr28:7865360-7865129 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 172
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 15, 10

Conread position: 5-241
Cow position: chr28:12430639-12430415 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 179
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 15, 10

Conread position: 5-241
Cow position: chr28:16211068-16211291 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 174
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 10, 40

Conread position: 5-241
Cow position: chr28:21868490-21868257 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 176
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 15, 10

Conread position: 5-241
Cow position: chr28:25056999-25056778 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 181
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 20, 54

Conread position: 5-242
Cow position: chr28:11426508-11426741 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 183
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 10, 14

Conread position: 14-241
Cow position: chr28:14649373-14649154 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 170
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 9, 5

Conread position: 16-169
Cow position: chr28:10762683-10762526 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 61

Conread position: 17-240
Cow position: chr28:13607909-13607693 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 158
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 61, 131

Conread position: 18-169
Cow position: chr28:7607956-7608113 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 18-233
Cow position: chr28:5204215-5204013 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 163
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 7, 48

Conread position: 18-241
Cow position: chr28:4090034-4090239 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 168
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 7, 36

Conread position: 19-232
Cow position: chr28:11866646-11866855 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 5, 58

Conread position: 19-234
Cow position: chr28:5144502-5144709 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 5, 43

Conread position: 19-234
Cow position: chr28:6059451-6059660 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 149
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 5, 45

Conread position: 19-241
Cow position: chr28:8681820-8682045 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 157
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 5, 164

Conread position: 19-241
Cow position: chr28:21380900-21380680 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 161
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 5, 41

Conread position: 20-241
Cow position: chr28:3914734-3914515 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 8, 146

Conread position: 20-241
Cow position: chr28:9390346-9390559 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 50, 57

Conread position: 22-169
Cow position: chr28:10863769-10863915 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 57, 49

Conread position: 22-233
Cow position: chr28:33052051-33051834 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 163
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 14, 157

Conread position: 22-241
Cow position: chr28:11585187-11585402 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 165
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 42, 59

Conread position: 22-241
Cow position: chr28:11687006-11687227 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 169
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 35, 144

Conread position: 22-241
Cow position: chr28:24646554-24646346 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 167
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 38, 55

Conread position: 22-242
Cow position: chr28:3751329-3751123 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 165
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 27, 50

Conread position: 22-249
Cow position: chr28:24966401-24966190 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 164
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 5, 0

Conread position: 23-232
Cow position: chr28:19024159-19023947 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 149
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 42, 98

Conread position: 23-241
Cow position: chr28:19079829-19080042 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 10, 39

Conread position: 23-242
Cow position: chr28:5128715-5128925 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 165
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 82, 0

Conread position: 23-252
Cow position: chr28:33163446-33163674 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 163
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 39, 148

Conread position: 25-237
Cow position: chr28:118038-118246 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 150
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 76, 51

Conread position: 26-224
Cow position: chr28:657440-657625 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 147
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 54, 0

Conread position: 26-235
Cow position: chr28:12619586-12619374 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 158
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 43, 144

Conread position: 26-241
Cow position: chr28:7980406-7980613 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 155
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 44, 79

Conread position: 26-241
Cow position: chr28:15063328-15063534 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 203, 34

Conread position: 26-241
Cow position: chr28:22371670-22371873 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 41, 67

Conread position: 26-241
Cow position: chr28:26784452-26784661 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 44, 51

Conread position: 27-240
Cow position: chr28:21672806-21672605 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 28-237
Cow position: chr28:4070976-4070778 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 77, 26

Conread position: 28-241
Cow position: chr28:16363956-16364163 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 71, 129

Conread position: 31-255
Cow position: chr28:10533926-10534140 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 64, 29

Conread position: 33-241
Cow position: chr28:8348650-8348847 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 69, 19

Conread position: 34-231
Cow position: chr28:13290126-13290319 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 33, 131

Conread position: 37-241
Cow position: chr28:21844958-21844761 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 152
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 134, 0

Conread position: 38-239
Cow position: chr28:34430424-34430619 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 64, 24

Conread position: 44-252
Cow position: chr28:8935929-8935727 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 160
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 55, 24

Conread position: 48-241
Cow position: chr28:23776037-23775851 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 51, 32

Conread position: 53-241
Cow position: chr28:5658538-5658359 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 143
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 45, 85

Conread position: 63-233
Cow position: chr28:11828968-11829129 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 43

Conread position: 68-241
Cow position: chr28:4809761-4809599 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 76-241
Cow position: chr28:11451500-11451661 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 23, 13

Conread position: 90-241
Cow position: chr28:25498556-25498698 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 91-241
Cow position: chr28:31841391-31841534 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 101-233
Cow position: chr28:13267721-13267595 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 49, 68

Conread position: 101-234
Cow position: chr28:20759985-20760111 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 55, 0

Conread position: 113-241
Cow position: chr28:8372397-8372276 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 58, 0

Show alignments to all cow chromosomes.