Cow genome map
| Conread name: | Ss1.1-rcbr0_006154.5 |
| Conread position: | 1-166 |
| Cow position: | chr29:10058505-10058673 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 14, 18 |
| Conread position: | 1-169 |
| Cow position: | chr29:29314622-29314795 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-169 |
| Cow position: | chr29:31674663-31674490 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-172 |
| Cow position: | chr29:27329923-27329749 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 14, 18 |
| Conread position: | 1-206 |
| Cow position: | chr29:34773707-34773904 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-212 |
| Cow position: | chr29:45005599-45005799 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 76, 14 |
| Conread position: | 1-220 |
| Cow position: | chr29:23243848-23244064 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-230 |
| Cow position: | chr29:22162219-22162441 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-234 |
| Cow position: | chr29:12680186-12679960 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 1-234 |
| Cow position: | chr29:22613460-22613233 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 24, 161 |
| Conread position: | 1-234 |
| Cow position: | chr29:22714693-22714922 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 98, 61 |
| Conread position: | 1-235 |
| Cow position: | chr29:29975068-29974845 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 1-241 |
| Cow position: | chr29:86981-87223 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 1-241 |
| Cow position: | chr29:2744237-2744473 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 1-241 |
| Cow position: | chr29:4480143-4480377 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 94, 14 |
| Conread position: | 1-241 |
| Cow position: | chr29:4874849-4875104 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 14, 172 |
| Conread position: | 1-241 |
| Cow position: | chr29:19762301-19762071 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 26, 60 |
| Conread position: | 1-241 |
| Cow position: | chr29:25737384-25737617 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 24, 176 |
| Conread position: | 1-241 |
| Cow position: | chr29:26615690-26615926 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 26, 68 |
| Conread position: | 1-241 |
| Cow position: | chr29:28446219-28446461 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-241 |
| Cow position: | chr29:36217145-36216916 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-241 |
| Cow position: | chr29:36530897-36530662 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 189 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-241 |
| Cow position: | chr29:40117602-40117367 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 24, 161 |
| Conread position: | 1-241 |
| Cow position: | chr29:40166274-40166041 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 105 |
| Conread position: | 1-242 |
| Cow position: | chr29:2623449-2623682 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-249 |
| Cow position: | chr29:43009054-43009294 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 26, 49 |
| Conread position: | 1-263 |
| Cow position: | chr29:732651-732393 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 24, 77 |
| Conread position: | 2-169 |
| Cow position: | chr29:10456533-10456699 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 2-241 |
| Cow position: | chr29:5098737-5098963 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 23, 74 |
| Conread position: | 3-234 |
| Cow position: | chr29:4520368-4520141 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 3-237 |
| Cow position: | chr29:25092138-25091912 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 59, 12 |
| Conread position: | 7-208 |
| Cow position: | chr29:27826547-27826353 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 14, 68 |
| Conread position: | 7-234 |
| Cow position: | chr29:35738247-35738464 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 13, 55 |
| Conread position: | 7-241 |
| Cow position: | chr29:39643198-39642975 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 88, 13 |
| Conread position: | 8-228 |
| Cow position: | chr29:4334750-4334539 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 12, 56 |
| Conread position: | 18-230 |
| Cow position: | chr29:5186480-5186689 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 7, 125 |
| Conread position: | 18-231 |
| Cow position: | chr29:32211053-32211251 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 7, 41 |
| Conread position: | 18-241 |
| Cow position: | chr29:19339003-19338778 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 5, 46 |
| Conread position: | 18-241 |
| Cow position: | chr29:26778896-26778683 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 7, 121 |
| Conread position: | 18-245 |
| Cow position: | chr29:17409348-17409125 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 6, 41 |
| Conread position: | 19-232 |
| Cow position: | chr29:11705133-11704930 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 5, 53 |
| Conread position: | 19-234 |
| Cow position: | chr29:868787-868578 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 5, 44 |
| Conread position: | 19-234 |
| Cow position: | chr29:11562625-11562420 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 8, 40 |
| Conread position: | 19-241 |
| Cow position: | chr29:24624261-24624046 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 58, 35 |
| Conread position: | 22-234 |
| Cow position: | chr29:2984899-2984690 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 85, 137 |
| Conread position: | 22-234 |
| Cow position: | chr29:23983947-23984157 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 42, 54 |
| Conread position: | 22-234 |
| Cow position: | chr29:28196998-28197202 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 84, 28 |
| Conread position: | 22-237 |
| Cow position: | chr29:9718759-9718970 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 42, 100 |
| Conread position: | 22-241 |
| Cow position: | chr29:5892853-5892645 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 22-241 |
| Cow position: | chr29:24103531-24103750 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 55, 71 |
| Conread position: | 22-241 |
| Cow position: | chr29:35501646-35501850 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 22-242 |
| Cow position: | chr29:17607426-17607214 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 23-241 |
| Cow position: | chr29:28195508-28195718 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 59, 43 |
| Conread position: | 23-253 |
| Cow position: | chr29:22778168-22778396 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 76, 36 |
| Conread position: | 25-234 |
| Cow position: | chr29:10818429-10818631 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 74, 35 |
| Conread position: | 25-234 |
| Cow position: | chr29:40852933-40852738 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 26-237 |
| Cow position: | chr29:40763676-40763882 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 36-241 |
| Cow position: | chr29:8125594-8125796 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 63, 135 |
| Conread position: | 36-241 |
| Cow position: | chr29:20903291-20903489 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 67, 28 |
| Conread position: | 37-241 |
| Cow position: | chr29:16657687-16657484 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 23, 131 |
| Conread position: | 40-229 |
| Cow position: | chr29:37785182-37785368 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 61-241 |
| Cow position: | chr29:10838923-10838749 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 16, 100 |
| Conread position: | 67-232 |
| Cow position: | chr29:21000609-21000447 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 38, 104 |
| Conread position: | 68-234 |
| Cow position: | chr29:3100292-3100456 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 93 |
| Conread position: | 70-237 |
| Cow position: | chr29:19125306-19125146 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 35, 97 |
| Conread position: | 98-230 |
| Cow position: | chr29:36183212-36183083 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 98-245 |
| Cow position: | chr29:25474851-25474701 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 101-241 |
| Cow position: | chr29:40096891-40096755 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
Show alignments to all cow chromosomes.