Cow genome map

Conread name: Ss1.1-rche27_k7.5

Conread position: 1-283
Cow position:
Alignm length: 285
Alignm identity: 187
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 123, 111

Conread position: 1-412
Cow position:
Alignm length: 413
Alignm identity: 257
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 408, 0

Conread position: 1-506
Cow position:
Alignm length: 508
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 346

Conread position: 1-544
Cow position:
Alignm length: 549
Alignm identity: 319
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 195, 28

Conread position: 1-653
Cow position:
Alignm length: 654
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 452, 458

Conread position: 1-703
Cow position:
Alignm length: 710
Alignm identity: 409
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 45, 37

Conread position: 1-704
Cow position:
Alignm length: 706
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 142

Conread position: 1-704
Cow position:
Alignm length: 707
Alignm identity: 395
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 239, 252

Conread position: 1-704
Cow position:
Alignm length: 713
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 181

Conread position: 1-705
Cow position:
Alignm length: 714
Alignm identity: 425
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 24, 64

Conread position: 1-712
Cow position:
Alignm length: 718
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 142

Conread position: 1-743
Cow position:
Alignm length: 746
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 172

Conread position: 3-651
Cow position:
Alignm length: 651
Alignm identity: 385
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 42, 54

Conread position: 3-661
Cow position:
Alignm length: 663
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 33

Conread position: 3-703
Cow position:
Alignm length: 704
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 38

Conread position: 3-710
Cow position:
Alignm length: 710
Alignm identity: 404
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 190, 198

Conread position: 4-286
Cow position:
Alignm length: 283
Alignm identity: 182
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 4-420
Cow position:
Alignm length: 419
Alignm identity: 271
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 188, 198

Conread position: 4-703
Cow position:
Alignm length: 706
Alignm identity: 406
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 124, 137

Conread position: 4-733
Cow position:
Alignm length: 735
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 42

Conread position: 4-743
Cow position:
Alignm length: 745
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 305

Conread position: 5-711
Cow position:
Alignm length: 709
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 150

Conread position: 6-491
Cow position:
Alignm length: 489
Alignm identity: 304
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 21, 41

Conread position: 6-492
Cow position:
Alignm length: 492
Alignm identity: 297
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 21, 38

Conread position: 6-537
Cow position:
Alignm length: 535
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 307

Conread position: 6-693
Cow position:
Alignm length: 691
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 35

Conread position: 6-743
Cow position:
Alignm length: 742
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 335, 348

Conread position: 7-575
Cow position:
Alignm length: 570
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 106

Conread position: 7-659
Cow position:
Alignm length: 657
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 41

Conread position: 7-667
Cow position:
Alignm length: 665
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 47

Conread position: 7-676
Cow position:
Alignm length: 670
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 7-710
Cow position:
Alignm length: 705
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 340

Conread position: 8-704
Cow position:
Alignm length: 700
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 29

Conread position: 8-704
Cow position:
Alignm length: 698
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 638, 624

Conread position: 8-743
Cow position:
Alignm length: 742
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 36

Conread position: 9-433
Cow position:
Alignm length: 429
Alignm identity: 258
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 117, 132

Conread position: 9-709
Cow position:
Alignm length: 703
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 117

Conread position: 13-743
Cow position:
Alignm length: 733
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 441, 461

Conread position: 14-704
Cow position:
Alignm length: 693
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 439, 445

Conread position: 14-709
Cow position:
Alignm length: 699
Alignm identity: 398
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 445, 86

Conread position: 14-713
Cow position:
Alignm length: 708
Alignm identity: 424
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 15, 30

Conread position: 14-722
Cow position:
Alignm length: 712
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 40

Conread position: 15-286
Cow position:
Alignm length: 273
Alignm identity: 174
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 115, 123

Conread position: 15-574
Cow position:
Alignm length: 562
Alignm identity: 332
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 33, 26

Conread position: 15-621
Cow position:
Alignm length: 611
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 207

Conread position: 15-621
Cow position:
Alignm length: 611
Alignm identity: 366
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 295, 280

Conread position: 15-673
Cow position:
Alignm length: 665
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 47

Conread position: 15-703
Cow position:
Alignm length: 695
Alignm identity: 402
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 12, 19

Conread position: 15-703
Cow position:
Alignm length: 693
Alignm identity: 401
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 31, 23

Conread position: 15-704
Cow position:
Alignm length: 691
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 51

Conread position: 15-704
Cow position:
Alignm length: 695
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 302

Conread position: 15-704
Cow position:
Alignm length: 690
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-710
Cow position:
Alignm length: 698
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 298

Conread position: 15-710
Cow position:
Alignm length: 697
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 626, 609

Conread position: 15-721
Cow position:
Alignm length: 712
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 23

Conread position: 15-722
Cow position:
Alignm length: 712
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 123

Conread position: 15-733
Cow position:
Alignm length: 725
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 123

Conread position: 15-733
Cow position:
Alignm length: 723
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 19

Conread position: 15-743
Cow position:
Alignm length: 733
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 279

Conread position: 15-743
Cow position:
Alignm length: 732
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 123

Conread position: 15-743
Cow position:
Alignm length: 731
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 123

Conread position: 17-757
Cow position:
Alignm length: 745
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 121

Conread position: 18-499
Cow position:
Alignm length: 482
Alignm identity: 282
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 18-574
Cow position:
Alignm length: 559
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 120

Conread position: 18-593
Cow position:
Alignm length: 582
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 40

Conread position: 18-704
Cow position:
Alignm length: 690
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 336

Conread position: 18-709
Cow position:
Alignm length: 695
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 25

Conread position: 18-736
Cow position:
Alignm length: 727
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 19

Conread position: 36-673
Cow position:
Alignm length: 643
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 102

Conread position: 56-576
Cow position:
Alignm length: 522
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 142

Conread position: 56-673
Cow position:
Alignm length: 619
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 398, 407

Conread position: 56-711
Cow position:
Alignm length: 657
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 252

Conread position: 57-493
Cow position:
Alignm length: 438
Alignm identity: 272
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 396, 402

Conread position: 57-667
Cow position:
Alignm length: 615
Alignm identity: 352
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 65, 86

Conread position: 57-704
Cow position:
Alignm length: 652
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 80

Conread position: 57-733
Cow position:
Alignm length: 678
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 495, 500

Conread position: 57-733
Cow position:
Alignm length: 678
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 251

Conread position: 64-673
Cow position:
Alignm length: 613
Alignm identity: 356
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 240, 136

Conread position: 64-703
Cow position:
Alignm length: 645
Alignm identity: 378
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 73, 79

Conread position: 65-710
Cow position:
Alignm length: 647
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 619, 7

Conread position: 66-499
Cow position:
Alignm length: 439
Alignm identity: 282
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 54, 59

Conread position: 67-722
Cow position:
Alignm length: 658
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 236

Conread position: 68-537
Cow position:
Alignm length: 472
Alignm identity: 286
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 52, 75

Conread position: 68-538
Cow position:
Alignm length: 474
Alignm identity: 283
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 62, 70

Conread position: 68-542
Cow position:
Alignm length: 477
Alignm identity: 287
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 251, 269

Conread position: 68-710
Cow position:
Alignm length: 647
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 123

Conread position: 68-722
Cow position:
Alignm length: 659
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 75

Conread position: 69-710
Cow position:
Alignm length: 644
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 390

Conread position: 69-711
Cow position:
Alignm length: 644
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 277

Conread position: 69-744
Cow position:
Alignm length: 678
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 32

Conread position: 75-652
Cow position:
Alignm length: 578
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 75-709
Cow position:
Alignm length: 639
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 245

Conread position: 78-661
Cow position:
Alignm length: 590
Alignm identity: 361
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 41, 34

Conread position: 79-575
Cow position:
Alignm length: 502
Alignm identity: 310
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 44, 32

Conread position: 81-711
Cow position:
Alignm length: 638
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 38

Conread position: 83-673
Cow position:
Alignm length: 593
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 227

Conread position: 105-703
Cow position:
Alignm length: 601
Alignm identity: 358
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 28, 38

Conread position: 136-711
Cow position:
Alignm length: 576
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 138-711
Cow position:
Alignm length: 576
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 21

Conread position: 143-711
Cow position:
Alignm length: 570
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 167

Conread position: 153-704
Cow position:
Alignm length: 557
Alignm identity: 342
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 80, 39

Conread position: 167-682
Cow position:
Alignm length: 516
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 183-500
Cow position:
Alignm length: 321
Alignm identity: 198
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 16, 9

Conread position: 186-743
Cow position:
Alignm length: 558
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 243-670
Cow position:
Alignm length: 432
Alignm identity: 276
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 69, 45

Conread position: 321-706
Cow position:
Alignm length: 388
Alignm identity: 239
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 60, 69

Conread position: 334-704
Cow position:
Alignm length: 371
Alignm identity: 233
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 345-719
Cow position:
Alignm length: 376
Alignm identity: 227
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 210, 42

Conread position: 366-676
Cow position:
Alignm length: 313
Alignm identity: 199
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 267, 37

Conread position: 376-711
Cow position:
Alignm length: 337
Alignm identity: 225
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 13, 17

Conread position: 383-733
Cow position:
Alignm length: 353
Alignm identity: 213
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 10, 75

Conread position: 392-704
Cow position:
Alignm length: 313
Alignm identity: 190
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 392-718
Cow position:
Alignm length: 329
Alignm identity: 216
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 61, 66

Conread position: 399-733
Cow position:
Alignm length: 338
Alignm identity: 218
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 79, 38

Conread position: 400-730
Cow position:
Alignm length: 332
Alignm identity: 208
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 71, 78

Conread position: 405-704
Cow position:
Alignm length: 302
Alignm identity: 191
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 96, 104

Conread position: 405-733
Cow position:
Alignm length: 331
Alignm identity: 214
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 80, 44

Conread position: 410-704
Cow position:
Alignm length: 296
Alignm identity: 185
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 226, 235

Conread position: 411-743
Cow position:
Alignm length: 333
Alignm identity: 204
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 414-743
Cow position:
Alignm length: 330
Alignm identity: 203
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 429-704
Cow position:
Alignm length: 276
Alignm identity: 179
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 474-711
Cow position:
Alignm length: 238
Alignm identity: 162
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 477-738
Cow position:
Alignm length: 266
Alignm identity: 177
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 161, 9

Conread position: 489-747
Cow position:
Alignm length: 259
Alignm identity: 165
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 42, 0

Show alignments to all cow chromosomes.