Cow genome map
| Conread name: | Ss1.1-rche27_k7.5 |
| Conread position: | 1-558 |
| Cow position: | chr17:22552087-22551530 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 332, 352 |
| Conread position: | 1-565 |
| Cow position: | chr17:41440778-41440214 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 336 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 234, 229 |
| Conread position: | 1-580 |
| Cow position: | chr17:22452204-22451624 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 350 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 340, 346 |
| Conread position: | 1-669 |
| Cow position: | chr17:22589841-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 402 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 26, 37 |
| Conread position: | 1-693 |
| Cow position: | chr17:22452372-22451680 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 332, 346 |
| Conread position: | 1-709 |
| Cow position: | chr17:41441114-41440406 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 415, 410 |
| Conread position: | 1-721 |
| Cow position: | chr17:22552255-22551535 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 220 |
| Conread position: | 1-742 |
| Cow position: | chr17:22552507-22551766 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-742 |
| Cow position: | chr17:22552759-22552018 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 57 |
| Conread position: | 1-742 |
| Cow position: | chr17:22553011-22552270 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-694 |
| Cow position: | chr17:22473261-22473953 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 409 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 322, 337 |
| Conread position: | 3-743 |
| Cow position: | chr17:22552421-22551681 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 65 |
| Conread position: | 4-514 |
| Cow position: | chr17:22552000-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 323 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 123, 107 |
| Conread position: | 4-671 |
| Cow position: | chr17:22552168-22551501 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-742 |
| Cow position: | chr17:22589922-22589184 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 291 |
| Conread position: | 4-743 |
| Cow position: | chr17:22552840-22552101 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 318 |
| Conread position: | 4-744 |
| Cow position: | chr17:22590174-22589434 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 36 |
| Conread position: | 5-721 |
| Cow position: | chr17:22552671-22551955 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 101 |
| Conread position: | 6-743 |
| Cow position: | chr17:41440941-41440204 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 62 |
| Conread position: | 7-704 |
| Cow position: | chr17:44467455-44468152 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 397 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 298, 303 |
| Conread position: | 9-420 |
| Cow position: | chr17:41440602-41440191 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-742 |
| Cow position: | chr17:22552331-22551598 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 102 |
| Conread position: | 15-611 |
| Cow position: | chr17:44467715-44468311 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 356 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 107, 90 |
| Conread position: | 15-684 |
| Cow position: | chr17:22499288-22498619 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 402 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 47, 56 |
| Conread position: | 15-743 |
| Cow position: | chr17:22590247-22589517 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 93 |
| Conread position: | 16-703 |
| Cow position: | chr17:22552912-22552226 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 186 |
| Conread position: | 16-744 |
| Cow position: | chr17:44467548-44468276 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 428 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 273, 291 |
| Conread position: | 17-508 |
| Cow position: | chr17:41440678-41440187 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 301 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-742 |
| Cow position: | chr17:22552554-22551850 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 166 |
| Conread position: | 38-742 |
| Cow position: | chr17:22553142-22552438 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 135 |
| Conread position: | 45-735 |
| Cow position: | chr17:22452412-22451722 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 415 |
| Conread position: | 54-670 |
| Cow position: | chr17:44467670-44468286 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 359 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 156, 148 |
| Conread position: | 56-714 |
| Cow position: | chr17:22590290-22589633 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 384 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 63, 55 |
| Conread position: | 57-673 |
| Cow position: | chr17:22499162-22498546 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 360 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 399, 405 |
| Conread position: | 81-711 |
| Cow position: | chr17:41441118-41440488 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 252 |
| Conread position: | 126-711 |
| Cow position: | chr17:22473300-22473885 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 346 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 171, 181 |
| Conread position: | 126-733 |
| Cow position: | chr17:22590304-22589697 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 353 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 69, 77 |
| Conread position: | 177-704 |
| Cow position: | chr17:22473267-22473794 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 121, 133 |
| Conread position: | 243-743 |
| Cow position: | chr17:22553105-22552605 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 304 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 93, 101 |
| Conread position: | 244-682 |
| Cow position: | chr17:44467355-44467794 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 63 |
| Conread position: | 360-703 |
| Cow position: | chr17:22499363-22499020 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 276, 284 |
| Conread position: | 429-742 |
| Cow position: | chr17:22590253-22589940 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 106, 99 |
| Conread position: | 467-742 |
| Cow position: | chr17:22452410-22452135 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 256, 263 |
Show alignments to all cow chromosomes.