Cow genome map
| Conread name: | Ss1.1-rche27_k7.5 |
| Conread position: | 1-285 |
| Cow position: | chr19:23597375-23597659 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-298 |
| Cow position: | chr19:14940754-14941051 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-664 |
| Cow position: | chr19:14960381-14959722 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 38 |
| Conread position: | 1-670 |
| Cow position: | chr19:20678045-20678714 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 391 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 76, 40 |
| Conread position: | 1-672 |
| Cow position: | chr19:14959963-14959308 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 399 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 43, 38 |
| Conread position: | 1-677 |
| Cow position: | chr19:23649480-23650156 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 250 |
| Conread position: | 1-694 |
| Cow position: | chr19:23613694-23614387 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 551, 538 |
| Conread position: | 1-724 |
| Cow position: | chr19:14959559-14958853 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 435 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 105, 113 |
| Conread position: | 1-742 |
| Cow position: | chr19:23614030-23614771 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 110 |
| Conread position: | 2-652 |
| Cow position: | chr19:14940419-14941069 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 307 |
| Conread position: | 4-589 |
| Cow position: | chr19:23597126-23597712 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 30 |
| Conread position: | 4-671 |
| Cow position: | chr19:23649819-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 400 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 116, 107 |
| Conread position: | 4-691 |
| Cow position: | chr19:23613445-23614132 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 405 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 124, 108 |
| Conread position: | 4-703 |
| Cow position: | chr19:23613865-23614563 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 410 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 44, 29 |
| Conread position: | 4-704 |
| Cow position: | chr19:20677712-20678412 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 410 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 21, 45 |
| Conread position: | 4-718 |
| Cow position: | chr19:23613613-23614327 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 425 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 111, 101 |
| Conread position: | 4-721 |
| Cow position: | chr19:23649315-23650032 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 111 |
| Conread position: | 4-753 |
| Cow position: | chr19:14940337-14941086 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 32 |
| Conread position: | 5-667 |
| Cow position: | chr19:23597043-23597705 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 310 |
| Conread position: | 6-733 |
| Cow position: | chr19:14940087-14940814 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 339 |
| Conread position: | 7-684 |
| Cow position: | chr19:23649654-23650331 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 194 |
| Conread position: | 7-698 |
| Cow position: | chr19:23649570-23650261 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 39 |
| Conread position: | 14-707 |
| Cow position: | chr19:23614295-23614988 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 415 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 367, 377 |
| Conread position: | 15-703 |
| Cow position: | chr19:23596972-23597657 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 61 |
| Conread position: | 15-711 |
| Cow position: | chr19:23649746-23650442 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 56 |
| Conread position: | 15-733 |
| Cow position: | chr19:14940264-14940982 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-743 |
| Cow position: | chr19:14940180-14940908 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 295 |
| Conread position: | 18-669 |
| Cow position: | chr19:23614467-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 93 |
| Conread position: | 18-675 |
| Cow position: | chr19:14960448-14959793 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 289 |
| Conread position: | 46-712 |
| Cow position: | chr19:14939960-14940625 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 18 |
| Conread position: | 48-523 |
| Cow position: | chr19:23597254-23597730 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 333, 345 |
| Conread position: | 56-585 |
| Cow position: | chr19:23649955-23650484 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 332 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 6, 12 |
| Conread position: | 64-420 |
| Cow position: | chr19:20635392-20635036 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 141, 145 |
| Conread position: | 65-553 |
| Cow position: | chr19:14948476-14947990 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 292 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 134, 73 |
| Conread position: | 65-744 |
| Cow position: | chr19:23613337-23614019 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 79 |
| Conread position: | 66-711 |
| Cow position: | chr19:23596855-23597497 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 180 |
| Conread position: | 68-704 |
| Cow position: | chr19:23596941-23597574 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 43 |
| Conread position: | 69-665 |
| Cow position: | chr19:20677609-20678205 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 348 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 121, 133 |
| Conread position: | 69-693 |
| Cow position: | chr19:23614434-23615058 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 371 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 122, 129 |
| Conread position: | 69-722 |
| Cow position: | chr19:23649464-23650117 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 239 |
| Conread position: | 73-710 |
| Cow position: | chr19:14960477-14959842 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 0 |
| Conread position: | 75-670 |
| Cow position: | chr19:23649302-23649897 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 51 |
| Conread position: | 141-677 |
| Cow position: | chr19:43570242-43569708 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 336 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 182, 152 |
| Conread position: | 142-725 |
| Cow position: | chr19:43570398-43569828 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 351 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 53, 5 |
| Conread position: | 144-735 |
| Cow position: | chr19:23596849-23597437 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 184 |
| Conread position: | 147-708 |
| Cow position: | chr19:20677435-20677995 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 343 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 48, 69 |
| Conread position: | 149-693 |
| Cow position: | chr19:20635644-20635099 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 331 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 5, 63 |
| Conread position: | 153-664 |
| Cow position: | chr19:20635555-20635044 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 315 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 144, 157 |
| Conread position: | 153-719 |
| Cow position: | chr19:23613510-23614076 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 328 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 485, 469 |
| Conread position: | 154-744 |
| Cow position: | chr19:23649297-23649887 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 137 |
| Conread position: | 158-735 |
| Cow position: | chr19:14939987-14940564 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 46 |
| Conread position: | 185-721 |
| Cow position: | chr19:14960449-14959915 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 315 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 417, 291 |
| Conread position: | 235-711 |
| Cow position: | chr19:14948472-14947999 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 287 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 98, 23 |
| Conread position: | 259-673 |
| Cow position: | chr19:20677631-20678045 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 371-665 |
| Cow position: | chr19:14959120-14958826 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-721 |
| Cow position: | chr19:23649284-23649612 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 74, 54 |
| Conread position: | 398-693 |
| Cow position: | chr19:20635646-20635351 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 92, 88 |
Show alignments to all cow chromosomes.