Cow genome map

Conread name: Ss1.1-rche27_k7.5

Conread position: 1-285
Cow position:
Alignm length: 285
Alignm identity: 182
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-298
Cow position:
Alignm length: 298
Alignm identity: 189
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-664
Cow position:
Alignm length: 668
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 38

Conread position: 1-670
Cow position:
Alignm length: 675
Alignm identity: 391
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 76, 40

Conread position: 1-672
Cow position:
Alignm length: 674
Alignm identity: 399
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 43, 38

Conread position: 1-677
Cow position:
Alignm length: 679
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 250

Conread position: 1-694
Cow position:
Alignm length: 698
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 551, 538

Conread position: 1-724
Cow position:
Alignm length: 727
Alignm identity: 435
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 105, 113

Conread position: 1-742
Cow position:
Alignm length: 746
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 110

Conread position: 2-652
Cow position:
Alignm length: 653
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 307

Conread position: 4-589
Cow position:
Alignm length: 590
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 30

Conread position: 4-671
Cow position:
Alignm length: 675
Alignm identity: 400
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 116, 107

Conread position: 4-691
Cow position:
Alignm length: 692
Alignm identity: 405
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 124, 108

Conread position: 4-703
Cow position:
Alignm length: 703
Alignm identity: 410
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 44, 29

Conread position: 4-704
Cow position:
Alignm length: 706
Alignm identity: 410
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 21, 45

Conread position: 4-718
Cow position:
Alignm length: 720
Alignm identity: 425
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 111, 101

Conread position: 4-721
Cow position:
Alignm length: 720
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 111

Conread position: 4-753
Cow position:
Alignm length: 752
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 32

Conread position: 5-667
Cow position:
Alignm length: 667
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 310

Conread position: 6-733
Cow position:
Alignm length: 729
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 330, 339

Conread position: 7-684
Cow position:
Alignm length: 685
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 194

Conread position: 7-698
Cow position:
Alignm length: 696
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 39

Conread position: 14-707
Cow position:
Alignm length: 699
Alignm identity: 415
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 367, 377

Conread position: 15-703
Cow position:
Alignm length: 694
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 61

Conread position: 15-711
Cow position:
Alignm length: 703
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 56

Conread position: 15-733
Cow position:
Alignm length: 719
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-743
Cow position:
Alignm length: 731
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 295

Conread position: 18-669
Cow position:
Alignm length: 660
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 93

Conread position: 18-675
Cow position:
Alignm length: 660
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 289

Conread position: 46-712
Cow position:
Alignm length: 671
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 18

Conread position: 48-523
Cow position:
Alignm length: 478
Alignm identity: 291
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 333, 345

Conread position: 56-585
Cow position:
Alignm length: 536
Alignm identity: 332
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 6, 12

Conread position: 64-420
Cow position:
Alignm length: 358
Alignm identity: 217
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 141, 145

Conread position: 65-553
Cow position:
Alignm length: 492
Alignm identity: 292
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 134, 73

Conread position: 65-744
Cow position:
Alignm length: 690
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 79

Conread position: 66-711
Cow position:
Alignm length: 649
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 180

Conread position: 68-704
Cow position:
Alignm length: 643
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 43

Conread position: 69-665
Cow position:
Alignm length: 599
Alignm identity: 348
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 121, 133

Conread position: 69-693
Cow position:
Alignm length: 627
Alignm identity: 371
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 122, 129

Conread position: 69-722
Cow position:
Alignm length: 660
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 239

Conread position: 73-710
Cow position:
Alignm length: 638
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 0

Conread position: 75-670
Cow position:
Alignm length: 597
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 51

Conread position: 141-677
Cow position:
Alignm length: 544
Alignm identity: 336
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 182, 152

Conread position: 142-725
Cow position:
Alignm length: 589
Alignm identity: 351
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 53, 5

Conread position: 144-735
Cow position:
Alignm length: 595
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 184

Conread position: 147-708
Cow position:
Alignm length: 569
Alignm identity: 343
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 48, 69

Conread position: 149-693
Cow position:
Alignm length: 553
Alignm identity: 331
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 5, 63

Conread position: 153-664
Cow position:
Alignm length: 520
Alignm identity: 315
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 144, 157

Conread position: 153-719
Cow position:
Alignm length: 568
Alignm identity: 328
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 485, 469

Conread position: 154-744
Cow position:
Alignm length: 596
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 137

Conread position: 158-735
Cow position:
Alignm length: 579
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 46

Conread position: 185-721
Cow position:
Alignm length: 538
Alignm identity: 315
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 417, 291

Conread position: 235-711
Cow position:
Alignm length: 478
Alignm identity: 287
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 98, 23

Conread position: 259-673
Cow position:
Alignm length: 415
Alignm identity: 247
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 371-665
Cow position:
Alignm length: 295
Alignm identity: 188
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 393-721
Cow position:
Alignm length: 331
Alignm identity: 209
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 74, 54

Conread position: 398-693
Cow position:
Alignm length: 297
Alignm identity: 188
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 92, 88

Show alignments to all cow chromosomes.