Cow genome map
| Conread name: | Ss1.1-rche27_k7.5 |
| Conread position: | 1-344 |
| Cow position: | chr22:11701277-11701621 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 117, 111 |
| Conread position: | 1-733 |
| Cow position: | chr22:12458516-12457784 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 110 |
| Conread position: | 1-742 |
| Cow position: | chr22:12431648-12430907 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 438 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 452, 460 |
| Conread position: | 4-500 |
| Cow position: | chr22:12385403-12384907 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 191, 202 |
| Conread position: | 4-524 |
| Cow position: | chr22:12431225-12430705 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-538 |
| Cow position: | chr22:14467986-14468520 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 319 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 111, 107 |
| Conread position: | 4-575 |
| Cow position: | chr22:12499385-12499956 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 348 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 126, 139 |
| Conread position: | 4-592 |
| Cow position: | chr22:12419016-12418428 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 352 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 454, 438 |
| Conread position: | 4-704 |
| Cow position: | chr22:12498965-12499665 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 314 |
| Conread position: | 4-710 |
| Cow position: | chr22:12476042-12475336 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 58 |
| Conread position: | 4-710 |
| Cow position: | chr22:12499217-12499923 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 20 |
| Conread position: | 4-711 |
| Cow position: | chr22:12458597-12457890 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 332 |
| Conread position: | 4-733 |
| Cow position: | chr22:12431561-12430832 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 36 |
| Conread position: | 4-735 |
| Cow position: | chr22:12431729-12430998 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 107 |
| Conread position: | 4-742 |
| Cow position: | chr22:12476210-12475472 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 107 |
| Conread position: | 4-742 |
| Cow position: | chr22:12499049-12499787 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 101 |
| Conread position: | 4-744 |
| Cow position: | chr22:12476294-12475552 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 314 |
| Conread position: | 5-420 |
| Cow position: | chr22:12475705-12475290 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 328, 340 |
| Conread position: | 5-420 |
| Cow position: | chr22:12499554-12499969 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 295, 332 |
| Conread position: | 5-583 |
| Cow position: | chr22:12475873-12475295 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 138 |
| Conread position: | 7-670 |
| Cow position: | chr22:12475955-12475292 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 290 |
| Conread position: | 8-669 |
| Cow position: | chr22:12458425-12457762 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 395 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 187, 194 |
| Conread position: | 14-503 |
| Cow position: | chr22:12458251-12457760 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 282 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 478, 0 |
| Conread position: | 14-671 |
| Cow position: | chr22:12399403-12398746 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 295 |
| Conread position: | 14-703 |
| Cow position: | chr22:12476116-12475428 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 134 |
| Conread position: | 14-704 |
| Cow position: | chr22:12432139-12431449 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 392 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 104, 97 |
| Conread position: | 14-709 |
| Cow position: | chr22:12385647-12384950 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 420 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 123, 129 |
| Conread position: | 14-711 |
| Cow position: | chr22:12476368-12475671 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 189 |
| Conread position: | 14-711 |
| Cow position: | chr22:12498891-12499588 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 189 |
| Conread position: | 14-713 |
| Cow position: | chr22:11640627-11641326 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 12 |
| Conread position: | 15-447 |
| Cow position: | chr22:11666469-11666901 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 103, 96 |
| Conread position: | 15-537 |
| Cow position: | chr22:11701123-11701645 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 314 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 103, 96 |
| Conread position: | 15-565 |
| Cow position: | chr22:11640880-11641430 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 331 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 277, 266 |
| Conread position: | 15-670 |
| Cow position: | chr22:12499312-12499967 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 111 |
| Conread position: | 15-697 |
| Cow position: | chr22:12431382-12430700 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 93 |
| Conread position: | 15-697 |
| Cow position: | chr22:12432222-12431540 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 400 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 176, 183 |
| Conread position: | 15-733 |
| Cow position: | chr22:12432390-12431672 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 420 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 15-743 |
| Cow position: | chr22:12399654-12398926 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 88 |
| Conread position: | 16-621 |
| Cow position: | chr22:12432053-12431448 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 354 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 437, 451 |
| Conread position: | 16-712 |
| Cow position: | chr22:12399737-12399041 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 374 |
| Conread position: | 17-711 |
| Cow position: | chr22:12419272-12418561 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 398 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 18-722 |
| Cow position: | chr22:12399567-12398863 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 119 |
| Conread position: | 18-743 |
| Cow position: | chr22:12431799-12431074 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 422 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 300, 318 |
| Conread position: | 19-736 |
| Cow position: | chr22:11640716-11641433 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 52 |
| Conread position: | 43-582 |
| Cow position: | chr22:12431102-12430561 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 309 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 509, 526 |
| Conread position: | 43-736 |
| Cow position: | chr22:12399458-12398765 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 100 |
| Conread position: | 57-721 |
| Cow position: | chr22:12499186-12499850 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 91 |
| Conread position: | 65-622 |
| Cow position: | chr22:14429970-14430527 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 327 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 129, 137 |
| Conread position: | 65-704 |
| Cow position: | chr22:46654169-46654808 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 397 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 83, 79 |
| Conread position: | 69-668 |
| Cow position: | chr22:12385508-12384907 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 42 |
| Conread position: | 69-704 |
| Cow position: | chr22:14429806-14430441 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 378 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 122, 129 |
| Conread position: | 74-693 |
| Cow position: | chr22:12432499-12431880 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 367 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 463, 457 |
| Conread position: | 80-537 |
| Cow position: | chr22:11666450-11666907 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 301, 306 |
| Conread position: | 80-670 |
| Cow position: | chr22:11701104-11701694 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 313 |
| Conread position: | 84-703 |
| Cow position: | chr22:12399837-12399219 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 118 |
| Conread position: | 98-659 |
| Cow position: | chr22:12419006-12418445 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 75 |
| Conread position: | 99-722 |
| Cow position: | chr22:12476367-12475744 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 113-672 |
| Cow position: | chr22:14442164-14442720 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 336 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 116, 120 |
| Conread position: | 114-703 |
| Cow position: | chr22:46654050-46654639 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 360 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 84, 69 |
| Conread position: | 114-722 |
| Cow position: | chr22:12498907-12499515 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 370 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 204, 223 |
| Conread position: | 132-743 |
| Cow position: | chr22:11640662-11641272 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 363 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 180, 10 |
| Conread position: | 141-711 |
| Cow position: | chr22:12498850-12499420 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 338 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 495, 505 |
| Conread position: | 142-733 |
| Cow position: | chr22:12458627-12458036 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 349 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 53, 60 |
| Conread position: | 177-659 |
| Cow position: | chr22:11666463-11666945 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 145, 104 |
| Conread position: | 177-673 |
| Cow position: | chr22:12419011-12418515 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 301 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 124, 145 |
| Conread position: | 177-704 |
| Cow position: | chr22:11701117-11701644 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 325 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 115, 104 |
| Conread position: | 197-716 |
| Cow position: | chr22:12385716-12385195 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 315 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 149, 141 |
| Conread position: | 222-743 |
| Cow position: | chr22:12498847-12499368 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 308 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 119, 125 |
| Conread position: | 259-712 |
| Cow position: | chr22:11701115-11701568 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 130, 125 |
| Conread position: | 259-743 |
| Cow position: | chr22:11666461-11666945 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 288 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 130, 125 |
| Conread position: | 295-743 |
| Cow position: | chr22:12476334-12475891 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 272 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 240, 12 |
| Conread position: | 344-703 |
| Cow position: | chr22:11640621-11640980 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 193, 187 |
| Conread position: | 345-733 |
| Cow position: | chr22:12476373-12475985 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 117, 102 |
| Conread position: | 360-697 |
| Cow position: | chr22:12432465-12432128 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 371-626 |
| Cow position: | chr22:12419336-12419083 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 390-693 |
| Cow position: | chr22:14429707-14430010 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 392-693 |
| Cow position: | chr22:14468038-14468339 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 160, 169 |
| Conread position: | 415-704 |
| Cow position: | chr22:12432494-12432205 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 421-721 |
| Cow position: | chr22:12399914-12399620 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 177, 74 |
| Conread position: | 428-703 |
| Cow position: | chr22:14467990-14468264 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 429-721 |
| Cow position: | chr22:12399828-12399536 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 25, 31 |
| Conread position: | 461-721 |
| Cow position: | chr22:12498834-12499094 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 477-721 |
| Cow position: | chr22:12476409-12476165 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 61, 54 |
Show alignments to all cow chromosomes.