Cow genome map

Conread name: Ss1.1-rche27_k7.5

Conread position: 1-284
Cow position: chr23:24560546-24560264 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 188
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 278, 0

Conread position: 1-285
Cow position: chr23:24560462-24560178 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 183
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-408
Cow position: chr23:24626316-24626723 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 261
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 189, 198

Conread position: 1-574
Cow position: chr23:25724035-25723465 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 344
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 48, 36

Conread position: 1-575
Cow position: chr23:24547238-24546664 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 36

Conread position: 1-743
Cow position: chr23:24639308-24640050 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 92

Conread position: 3-673
Cow position: chr23:24639394-24640064 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 37

Conread position: 3-743
Cow position: chr23:24560880-24560140 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 457, 447

Conread position: 4-270
Cow position: chr23:24639815-24640081 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 168
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 118, 107

Conread position: 4-422
Cow position: chr23:24535866-24535448 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 250
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 187, 194

Conread position: 4-544
Cow position: chr23:24560627-24560088 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 107

Conread position: 4-650
Cow position: chr23:24522804-24522163 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 373
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 450, 17

Conread position: 4-722
Cow position: chr23:25626209-25626924 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 315

Conread position: 7-522
Cow position: chr23:24639566-24640081 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 104

Conread position: 7-574
Cow position: chr23:25660165-25660732 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 334, 338

Conread position: 7-743
Cow position: chr23:24639230-24639966 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 151

Conread position: 9-286
Cow position: chr23:25724111-25723834 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 183
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 9-670
Cow position: chr23:24547314-24546653 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 112

Conread position: 14-631
Cow position: chr23:24639489-24640106 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 19

Conread position: 14-743
Cow position: chr23:25626303-25627029 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 87

Conread position: 15-583
Cow position: chr23:24560700-24560132 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 96

Conread position: 15-707
Cow position: chr23:25626136-25626825 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 413
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 118, 126

Conread position: 57-626
Cow position: chr23:24535981-24535411 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 337
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 138, 145

Conread position: 72-672
Cow position: chr23:25660146-25660746 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 73-491
Cow position: chr23:25724131-25723713 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 250
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 311, 307

Conread position: 73-706
Cow position: chr23:24547334-24546701 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 274

Conread position: 73-734
Cow position: chr23:25626026-25626684 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 389
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 45, 35

Conread position: 78-693
Cow position: chr23:24522814-24522204 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 364
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 59, 30

Conread position: 92-653
Cow position: chr23:25698641-25698080 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 338
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 228, 242

Conread position: 99-671
Cow position: chr23:24560700-24560128 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 223

Conread position: 141-733
Cow position: chr23:25698676-25698084 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 358
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 54, 67

Conread position: 145-703
Cow position: chr23:25660134-25660692 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 178

Conread position: 152-742
Cow position: chr23:24536054-24535464 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 364
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 61, 69

Conread position: 155-575
Cow position: chr23:24626302-24626722 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 273
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 146, 155

Conread position: 165-712
Cow position: chr23:24522811-24522269 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 321
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 386, 21

Conread position: 177-575
Cow position: chr23:25724111-25723713 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 247
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 375, 380

Conread position: 219-676
Cow position: chr23:24626282-24626739 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 287
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 10, 15

Conread position: 222-743
Cow position: chr23:25660128-25660649 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 320
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 16, 7

Conread position: 254-615
Cow position: chr23:24654042-24654403 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 229
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 321-722
Cow position: chr23:24626302-24626701 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 13

Conread position: 327-703
Cow position: chr23:25626028-25626404 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 240
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 222, 234

Conread position: 327-743
Cow position: chr23:25724129-25723713 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 259
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 345-672
Cow position: chr23:24654049-24654376 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 207
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 360-724
Cow position: chr23:25660182-25660546 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 171

Conread position: 362-743
Cow position: chr23:24547296-24546916 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 248
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 175, 9

Conread position: 362-743
Cow position: chr23:25625979-25626360 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 247
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 92, 100

Conread position: 392-743
Cow position: chr23:24560911-24560560 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 231
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 158, 168

Conread position: 407-747
Cow position: chr23:24626302-24626644 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 225
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 325, 0

Conread position: 413-743
Cow position: chr23:24639216-24639546 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 214
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 43, 50

Conread position: 425-756
Cow position: chr23:24654045-24654375 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 211
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 208, 220

Conread position: 500-743
Cow position: chr23:24654036-24654279 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 158
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 230, 199

Conread position: 507-744
Cow position: chr23:24639226-24639463 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 162
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 129, 139

Show alignments to all cow chromosomes.