Cow genome map

Conread name: Ss1.1-rche27_k7.5

Conread position: 1-422
Cow position:
Alignm length: 423
Alignm identity: 265
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 419, 0

Conread position: 1-517
Cow position:
Alignm length: 518
Alignm identity: 320
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 41, 47

Conread position: 1-551
Cow position:
Alignm length: 553
Alignm identity: 326
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 45, 40

Conread position: 1-621
Cow position:
Alignm length: 627
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 34

Conread position: 1-675
Cow position:
Alignm length: 683
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 352

Conread position: 1-698
Cow position:
Alignm length: 701
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 129

Conread position: 1-704
Cow position:
Alignm length: 707
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 136

Conread position: 1-705
Cow position:
Alignm length: 708
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 389, 393

Conread position: 1-711
Cow position:
Alignm length: 714
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 47

Conread position: 1-712
Cow position:
Alignm length: 715
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 142

Conread position: 1-722
Cow position:
Alignm length: 722
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 593, 0

Conread position: 1-733
Cow position:
Alignm length: 736
Alignm identity: 438
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 284, 309

Conread position: 1-758
Cow position:
Alignm length: 759
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 126

Conread position: 1-764
Cow position:
Alignm length: 774
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 458

Conread position: 3-411
Cow position:
Alignm length: 413
Alignm identity: 260
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 44, 38

Conread position: 3-648
Cow position:
Alignm length: 651
Alignm identity: 367
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 46, 38

Conread position: 3-743
Cow position:
Alignm length: 752
Alignm identity: 453
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 149, 108

Conread position: 4-620
Cow position:
Alignm length: 620
Alignm identity: 372
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 280, 304

Conread position: 5-698
Cow position:
Alignm length: 696
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 447, 454

Conread position: 7-283
Cow position:
Alignm length: 279
Alignm identity: 184
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 22, 37

Conread position: 7-506
Cow position:
Alignm length: 503
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 50

Conread position: 7-547
Cow position:
Alignm length: 542
Alignm identity: 316
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 72, 65

Conread position: 7-661
Cow position:
Alignm length: 655
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 7-675
Cow position:
Alignm length: 670
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 560, 567

Conread position: 7-679
Cow position:
Alignm length: 677
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 35

Conread position: 7-704
Cow position:
Alignm length: 700
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 191

Conread position: 7-704
Cow position:
Alignm length: 700
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 436, 425

Conread position: 7-711
Cow position:
Alignm length: 707
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 28

Conread position: 7-711
Cow position:
Alignm length: 707
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 543, 549

Conread position: 7-721
Cow position:
Alignm length: 717
Alignm identity: 416
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 310, 190

Conread position: 8-421
Cow position:
Alignm length: 414
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-421
Cow position:
Alignm length: 414
Alignm identity: 242
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 8-563
Cow position:
Alignm length: 557
Alignm identity: 335
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 301, 295

Conread position: 8-704
Cow position:
Alignm length: 702
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 133

Conread position: 8-743
Cow position:
Alignm length: 736
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 9-620
Cow position:
Alignm length: 613
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 361

Conread position: 9-667
Cow position:
Alignm length: 661
Alignm identity: 380
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 116, 109

Conread position: 9-704
Cow position:
Alignm length: 697
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 632, 618

Conread position: 9-704
Cow position:
Alignm length: 698
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 282

Conread position: 13-539
Cow position:
Alignm length: 535
Alignm identity: 339
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 14, 34

Conread position: 14-283
Cow position:
Alignm length: 271
Alignm identity: 171
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 15, 33

Conread position: 14-565
Cow position:
Alignm length: 557
Alignm identity: 331
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 41, 59

Conread position: 15-296
Cow position:
Alignm length: 283
Alignm identity: 177
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 199, 205

Conread position: 15-337
Cow position:
Alignm length: 325
Alignm identity: 202
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 102, 111

Conread position: 15-659
Cow position:
Alignm length: 648
Alignm identity: 380
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 14, 29

Conread position: 15-743
Cow position:
Alignm length: 737
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 23

Conread position: 16-238
Cow position:
Alignm length: 223
Alignm identity: 143
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 16-399
Cow position:
Alignm length: 385
Alignm identity: 229
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 296, 300

Conread position: 17-693
Cow position:
Alignm length: 686
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 156

Conread position: 43-660
Cow position:
Alignm length: 619
Alignm identity: 357
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 254, 266

Conread position: 43-704
Cow position:
Alignm length: 667
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 250

Conread position: 56-495
Cow position:
Alignm length: 443
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 387, 367

Conread position: 57-400
Cow position:
Alignm length: 345
Alignm identity: 220
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 114, 121

Conread position: 57-501
Cow position:
Alignm length: 446
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 336

Conread position: 57-660
Cow position:
Alignm length: 609
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 28

Conread position: 63-693
Cow position:
Alignm length: 637
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 17

Conread position: 64-648
Cow position:
Alignm length: 588
Alignm identity: 343
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 27, 9

Conread position: 65-507
Cow position:
Alignm length: 444
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 372, 367

Conread position: 66-548
Cow position:
Alignm length: 485
Alignm identity: 285
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 25, 7

Conread position: 68-539
Cow position:
Alignm length: 473
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 75

Conread position: 69-498
Cow position:
Alignm length: 430
Alignm identity: 259
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 72-710
Cow position:
Alignm length: 643
Alignm identity: 372
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 305, 297

Conread position: 74-704
Cow position:
Alignm length: 632
Alignm identity: 358
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 14, 0

Conread position: 75-667
Cow position:
Alignm length: 597
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 191

Conread position: 75-693
Cow position:
Alignm length: 621
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 272

Conread position: 77-706
Cow position:
Alignm length: 631
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 605, 295

Conread position: 78-412
Cow position:
Alignm length: 335
Alignm identity: 211
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 78-709
Cow position:
Alignm length: 634
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 375, 381

Conread position: 79-703
Cow position:
Alignm length: 626
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 267

Conread position: 80-484
Cow position:
Alignm length: 406
Alignm identity: 252
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 374, 381

Conread position: 80-658
Cow position:
Alignm length: 580
Alignm identity: 348
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 253, 267

Conread position: 80-704
Cow position:
Alignm length: 626
Alignm identity: 364
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 253, 265

Conread position: 81-704
Cow position:
Alignm length: 628
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 45

Conread position: 98-491
Cow position:
Alignm length: 395
Alignm identity: 256
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 170, 160

Conread position: 108-658
Cow position:
Alignm length: 555
Alignm identity: 332
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 29, 36

Conread position: 111-667
Cow position:
Alignm length: 559
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 45

Conread position: 125-417
Cow position:
Alignm length: 293
Alignm identity: 179
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 131-670
Cow position:
Alignm length: 543
Alignm identity: 332
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 322, 332

Conread position: 139-580
Cow position:
Alignm length: 448
Alignm identity: 276
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 173, 165

Conread position: 141-698
Cow position:
Alignm length: 560
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 61

Conread position: 144-721
Cow position:
Alignm length: 585
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 49

Conread position: 149-626
Cow position:
Alignm length: 479
Alignm identity: 298
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 402, 412

Conread position: 153-536
Cow position:
Alignm length: 385
Alignm identity: 237
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 25, 20

Conread position: 153-706
Cow position:
Alignm length: 555
Alignm identity: 318
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 240, 228

Conread position: 157-565
Cow position:
Alignm length: 412
Alignm identity: 257
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 131, 139

Conread position: 157-743
Cow position:
Alignm length: 587
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 157-743
Cow position:
Alignm length: 588
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 559, 193

Conread position: 164-711
Cow position:
Alignm length: 548
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 165-743
Cow position:
Alignm length: 587
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 148

Conread position: 167-575
Cow position:
Alignm length: 410
Alignm identity: 247
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 378, 373

Conread position: 167-743
Cow position:
Alignm length: 577
Alignm identity: 330
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 168-743
Cow position:
Alignm length: 577
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 226

Conread position: 183-704
Cow position:
Alignm length: 524
Alignm identity: 305
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 191, 162

Conread position: 198-626
Cow position:
Alignm length: 431
Alignm identity: 268
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 19, 28

Conread position: 198-703
Cow position:
Alignm length: 512
Alignm identity: 315
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 90, 113

Conread position: 219-703
Cow position:
Alignm length: 487
Alignm identity: 304
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 96, 70

Conread position: 222-637
Cow position:
Alignm length: 416
Alignm identity: 258
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 234-711
Cow position:
Alignm length: 480
Alignm identity: 298
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 54, 58

Conread position: 239-619
Cow position:
Alignm length: 386
Alignm identity: 240
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 62, 78

Conread position: 246-585
Cow position:
Alignm length: 342
Alignm identity: 210
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 54, 91

Conread position: 246-651
Cow position:
Alignm length: 409
Alignm identity: 252
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 186, 193

Conread position: 246-712
Cow position:
Alignm length: 468
Alignm identity: 291
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 384, 380

Conread position: 250-673
Cow position:
Alignm length: 428
Alignm identity: 265
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 193, 173

Conread position: 251-704
Cow position:
Alignm length: 456
Alignm identity: 267
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 218, 174

Conread position: 261-611
Cow position:
Alignm length: 351
Alignm identity: 213
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 261-658
Cow position:
Alignm length: 399
Alignm identity: 236
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 129, 120

Conread position: 267-722
Cow position:
Alignm length: 462
Alignm identity: 297
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 30, 55

Conread position: 268-652
Cow position:
Alignm length: 388
Alignm identity: 243
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 37, 42

Conread position: 269-631
Cow position:
Alignm length: 363
Alignm identity: 215
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 317-648
Cow position:
Alignm length: 335
Alignm identity: 209
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 11, 131

Conread position: 321-704
Cow position:
Alignm length: 385
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 26

Conread position: 321-733
Cow position:
Alignm length: 418
Alignm identity: 262
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 68, 72

Conread position: 323-555
Cow position:
Alignm length: 235
Alignm identity: 156
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 140

Conread position: 325-721
Cow position:
Alignm length: 401
Alignm identity: 245
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 70, 64

Conread position: 329-658
Cow position:
Alignm length: 332
Alignm identity: 214
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 118, 131

Conread position: 329-711
Cow position:
Alignm length: 385
Alignm identity: 244
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 118, 130

Conread position: 335-713
Cow position:
Alignm length: 379
Alignm identity: 229
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 349, 0

Conread position: 359-703
Cow position:
Alignm length: 347
Alignm identity: 219
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 202, 153

Conread position: 360-704
Cow position:
Alignm length: 345
Alignm identity: 215
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 50, 0

Conread position: 373-673
Cow position:
Alignm length: 301
Alignm identity: 197
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 388-652
Cow position:
Alignm length: 265
Alignm identity: 168
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 392-721
Cow position:
Alignm length: 330
Alignm identity: 213
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 393-743
Cow position:
Alignm length: 354
Alignm identity: 233
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 60, 73

Conread position: 393-743
Cow position:
Alignm length: 353
Alignm identity: 218
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 97, 89

Conread position: 394-721
Cow position:
Alignm length: 330
Alignm identity: 204
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 59, 69

Conread position: 407-703
Cow position:
Alignm length: 297
Alignm identity: 186
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 407-704
Cow position:
Alignm length: 300
Alignm identity: 188
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 61, 40

Conread position: 408-673
Cow position:
Alignm length: 267
Alignm identity: 168
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 82, 75

Conread position: 411-744
Cow position:
Alignm length: 335
Alignm identity: 207
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 270, 264

Conread position: 414-704
Cow position:
Alignm length: 294
Alignm identity: 191
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 164, 181

Conread position: 414-722
Cow position:
Alignm length: 310
Alignm identity: 207
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 186, 192

Conread position: 414-743
Cow position:
Alignm length: 331
Alignm identity: 217
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 186, 192

Conread position: 414-744
Cow position:
Alignm length: 332
Alignm identity: 203
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 220, 232

Conread position: 420-721
Cow position:
Alignm length: 304
Alignm identity: 202
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 33, 43

Conread position: 429-743
Cow position:
Alignm length: 317
Alignm identity: 204
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 212, 198

Conread position: 438-704
Cow position:
Alignm length: 270
Alignm identity: 177
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 148, 159

Conread position: 438-720
Cow position:
Alignm length: 285
Alignm identity: 178
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 268, 0

Conread position: 454-743
Cow position:
Alignm length: 291
Alignm identity: 185
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 237, 194

Conread position: 477-711
Cow position:
Alignm length: 235
Alignm identity: 153
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 484-744
Cow position:
Alignm length: 263
Alignm identity: 170
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 7

Conread position: 485-743
Cow position:
Alignm length: 262
Alignm identity: 175
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 25, 8

Conread position: 488-711
Cow position:
Alignm length: 225
Alignm identity: 153
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 64, 22

Conread position: 497-746
Cow position:
Alignm length: 251
Alignm identity: 171
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 144, 131

Show alignments to all cow chromosomes.