Cow genome map
| Conread name: | Ss1.1-rche27_k7.5 |
| Conread position: | 1-298 |
| Cow position: | chr28:33210319-33210617 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 242, 0 |
| Conread position: | 1-430 |
| Cow position: | chr28:34696171-34696598 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 273 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 50, 55 |
| Conread position: | 1-502 |
| Cow position: | chr28:9253110-9253613 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 494, 0 |
| Conread position: | 1-669 |
| Cow position: | chr28:7758179-7758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 369 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 489, 132 |
| Conread position: | 1-693 |
| Cow position: | chr28:7757927-7758603 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 392 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 119, 126 |
| Conread position: | 1-693 |
| Cow position: | chr28:9298741-9299416 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 407 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 126, 77 |
| Conread position: | 4-575 |
| Cow position: | chr28:34696006-34696577 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 134 |
| Conread position: | 4-671 |
| Cow position: | chr28:9252945-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 123 |
| Conread position: | 4-721 |
| Cow position: | chr28:7757594-7758311 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 343 |
| Conread position: | 4-722 |
| Cow position: | chr28:9289928-9290642 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 446 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 51, 35 |
| Conread position: | 4-733 |
| Cow position: | chr28:7758014-7758727 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 131 |
| Conread position: | 5-625 |
| Cow position: | chr28:9253030-9253651 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 575, 595 |
| Conread position: | 5-712 |
| Cow position: | chr28:7757427-7758134 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 340 |
| Conread position: | 5-716 |
| Cow position: | chr28:7757847-7758542 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 395 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 293, 333 |
| Conread position: | 14-684 |
| Cow position: | chr28:7810284-7810945 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 398 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 103, 113 |
| Conread position: | 14-697 |
| Cow position: | chr28:11333865-11333182 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 405 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 30, 25 |
| Conread position: | 14-703 |
| Cow position: | chr28:7757352-7758041 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 97 |
| Conread position: | 14-704 |
| Cow position: | chr28:7757520-7758210 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 97 |
| Conread position: | 16-514 |
| Cow position: | chr28:34696102-34696598 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 40 |
| Conread position: | 16-550 |
| Cow position: | chr28:11333695-11333159 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 324 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 182, 174 |
| Conread position: | 16-650 |
| Cow position: | chr28:34695934-34696568 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-745 |
| Cow position: | chr28:11333945-11333218 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 316 |
| Conread position: | 19-716 |
| Cow position: | chr28:9298675-9299355 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 415 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 111, 122 |
| Conread position: | 64-673 |
| Cow position: | chr28:11334151-11333542 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 283 |
| Conread position: | 66-722 |
| Cow position: | chr28:11334233-11333577 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 136 |
| Conread position: | 68-421 |
| Cow position: | chr28:33210302-33210656 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 232, 249 |
| Conread position: | 68-711 |
| Cow position: | chr28:34695902-34696545 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 84 |
| Conread position: | 78-500 |
| Cow position: | chr28:33210228-33210653 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 255, 268 |
| Conread position: | 78-661 |
| Cow position: | chr28:11334053-11333470 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 351 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 54, 67 |
| Conread position: | 124-711 |
| Cow position: | chr28:34695874-34696461 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 106 |
| Conread position: | 126-711 |
| Cow position: | chr28:9252983-9253568 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 189 |
| Conread position: | 126-721 |
| Cow position: | chr28:9252898-9253494 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 355 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 43, 222 |
| Conread position: | 164-714 |
| Cow position: | chr28:34673357-34673907 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 317 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 169, 183 |
| Conread position: | 165-555 |
| Cow position: | chr28:33210231-33210622 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 133, 151 |
| Conread position: | 186-711 |
| Cow position: | chr28:34695852-34696377 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 136 |
| Conread position: | 228-743 |
| Cow position: | chr28:7757398-7757913 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 119 |
| Conread position: | 246-668 |
| Cow position: | chr28:33210228-33210653 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 271 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 198, 212 |
| Conread position: | 268-722 |
| Cow position: | chr28:34695850-34696304 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 287 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 131, 138 |
| Conread position: | 314-743 |
| Cow position: | chr28:11334151-11333724 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 282 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 133, 21 |
| Conread position: | 321-743 |
| Cow position: | chr28:9253010-9253432 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 323-721 |
| Cow position: | chr28:33210221-33210620 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 0 |
| Conread position: | 327-733 |
| Cow position: | chr28:9298731-9299134 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 54, 63 |
| Conread position: | 392-697 |
| Cow position: | chr28:7758470-7758775 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-704 |
| Cow position: | chr28:9298631-9298939 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 393-743 |
| Cow position: | chr28:9290233-9290579 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 26 |
| Conread position: | 413-743 |
| Cow position: | chr28:33210227-33210557 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 88, 96 |
| Conread position: | 462-733 |
| Cow position: | chr28:9252898-9253170 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 137 |
Show alignments to all cow chromosomes.