Cow genome map
| Conread name: | Ss1.1-rche27_k7.5 |
| Conread position: | 1-574 |
| Cow position: | chr7:42878849-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 100 |
| Conread position: | 1-638 |
| Cow position: | chr7:18390169-18390806 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 105 |
| Conread position: | 1-704 |
| Cow position: | chr7:8324908-8325611 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 398 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 56, 45 |
| Conread position: | 1-725 |
| Cow position: | chr7:3180040-3180762 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 453, 461 |
| Conread position: | 2-333 |
| Cow position: | chr7:11600843-11600512 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 139, 135 |
| Conread position: | 4-675 |
| Cow position: | chr7:42878930-42878257 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 292 |
| Conread position: | 4-693 |
| Cow position: | chr7:11601177-11600488 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 405 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 23, 43 |
| Conread position: | 4-712 |
| Cow position: | chr7:3180127-3180833 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 35 |
| Conread position: | 4-732 |
| Cow position: | chr7:42879098-42878370 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 368 |
| Conread position: | 4-733 |
| Cow position: | chr7:42879182-42878453 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 332 |
| Conread position: | 7-660 |
| Cow position: | chr7:28846436-28847089 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 397 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 22, 43 |
| Conread position: | 9-496 |
| Cow position: | chr7:12293531-12294018 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 294 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 300, 288 |
| Conread position: | 9-625 |
| Cow position: | chr7:12293363-12293979 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 360 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 30, 41 |
| Conread position: | 14-547 |
| Cow position: | chr7:1014959-1015494 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 315 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 10, 35 |
| Conread position: | 15-703 |
| Cow position: | chr7:3179802-3180489 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 24 |
| Conread position: | 56-632 |
| Cow position: | chr7:12293326-12293902 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 340 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 496, 505 |
| Conread position: | 57-625 |
| Cow position: | chr7:1014918-1015488 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 349 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 240, 252 |
| Conread position: | 57-673 |
| Cow position: | chr7:8277659-8278275 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 363 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 142, 136 |
| Conread position: | 57-711 |
| Cow position: | chr7:1014750-1015404 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 388 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 61, 53 |
| Conread position: | 64-675 |
| Cow position: | chr7:18390148-18390761 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 138 |
| Conread position: | 64-703 |
| Cow position: | chr7:3179767-3180405 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 47 |
| Conread position: | 64-703 |
| Cow position: | chr7:8277750-8278388 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 380 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 69, 83 |
| Conread position: | 64-704 |
| Cow position: | chr7:8325475-8326115 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 377 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 141, 152 |
| Conread position: | 64-735 |
| Cow position: | chr7:1014673-1015344 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 59 |
| Conread position: | 65-709 |
| Cow position: | chr7:8277583-8278227 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 389 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 67, 61 |
| Conread position: | 126-742 |
| Cow position: | chr7:42879228-42878612 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 366 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 171, 189 |
| Conread position: | 141-735 |
| Cow position: | chr7:3179760-3180354 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 61 |
| Conread position: | 143-735 |
| Cow position: | chr7:1014668-1015260 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 65 |
| Conread position: | 145-725 |
| Cow position: | chr7:11601204-11600626 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 348 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 180, 193 |
| Conread position: | 147-743 |
| Cow position: | chr7:18390147-18390743 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 57 |
| Conread position: | 219-714 |
| Cow position: | chr7:42879219-42878725 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 300 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 480, 0 |
| Conread position: | 269-704 |
| Cow position: | chr7:28846446-28846881 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 29, 41 |
| Conread position: | 304-724 |
| Cow position: | chr7:1439865-1440284 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 334, 110 |
| Conread position: | 426-693 |
| Cow position: | chr7:3179709-3179976 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 109, 105 |
| Conread position: | 438-733 |
| Cow position: | chr7:42879252-42878957 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 285, 291 |
Show alignments to all cow chromosomes.