Cow genome map
| Conread name: | Ss1.1-rche27_k7.5 |
| Conread position: | 1-262 |
| Cow position: | chr8:45201613-45201874 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 117, 110 |
| Conread position: | 1-670 |
| Cow position: | chr8:48407455-48406786 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 306 |
| Conread position: | 1-703 |
| Cow position: | chr8:46816472-46817173 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 110 |
| Conread position: | 1-712 |
| Cow position: | chr8:48407119-48406408 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 291 |
| Conread position: | 1-718 |
| Cow position: | chr8:46816640-46817357 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 436 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 117, 110 |
| Conread position: | 1-722 |
| Cow position: | chr8:46815968-46816689 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 110 |
| Conread position: | 1-743 |
| Cow position: | chr8:45201109-45201851 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 110 |
| Conread position: | 4-668 |
| Cow position: | chr8:46816727-46817391 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 388 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 120, 108 |
| Conread position: | 4-670 |
| Cow position: | chr8:48406948-48406280 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 195 |
| Conread position: | 4-704 |
| Cow position: | chr8:46816559-46817259 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 452, 459 |
| Conread position: | 4-724 |
| Cow position: | chr8:46816139-46816859 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 139 |
| Conread position: | 5-669 |
| Cow position: | chr8:45201281-45201944 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 107 |
| Conread position: | 5-712 |
| Cow position: | chr8:45201029-45201736 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 106 |
| Conread position: | 5-722 |
| Cow position: | chr8:46816056-46816773 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 530, 526 |
| Conread position: | 7-704 |
| Cow position: | chr8:55581003-55581700 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 405 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 37, 32 |
| Conread position: | 8-693 |
| Cow position: | chr8:55580920-55581605 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 405 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 36, 29 |
| Conread position: | 13-719 |
| Cow position: | chr8:46816400-46817106 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 189 |
| Conread position: | 14-541 |
| Cow position: | chr8:45201374-45201901 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 97 |
| Conread position: | 14-673 |
| Cow position: | chr8:48407526-48406867 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 207 |
| Conread position: | 14-733 |
| Cow position: | chr8:45200786-45201505 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 92 |
| Conread position: | 14-742 |
| Cow position: | chr8:48407022-48406294 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 129 |
| Conread position: | 15-709 |
| Cow position: | chr8:48407609-48406915 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 307 |
| Conread position: | 15-735 |
| Cow position: | chr8:46816318-46817038 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 450, 463 |
| Conread position: | 18-711 |
| Cow position: | chr8:55580846-55581539 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 32 |
| Conread position: | 64-537 |
| Cow position: | chr8:55581228-55581701 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 280 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 378, 395 |
| Conread position: | 64-703 |
| Cow position: | chr8:48407140-48406501 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 70-742 |
| Cow position: | chr8:48407638-48406966 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 245 |
| Conread position: | 78-743 |
| Cow position: | chr8:45201018-45201683 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 33 |
| Conread position: | 136-743 |
| Cow position: | chr8:45200993-45201599 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 7 |
| Conread position: | 221-712 |
| Cow position: | chr8:55580797-55581288 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 89 |
| Conread position: | 392-736 |
| Cow position: | chr8:46816107-46816451 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 62, 71 |
| Conread position: | 393-744 |
| Cow position: | chr8:48407567-48407214 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 61, 66 |
Show alignments to all cow chromosomes.