Cow genome map
| Conread name: | Ss1.1-rche27_k7.5 |
| Conread position: | 1-261 |
| Cow position: | chrX:29044917-29044657 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 117, 110 |
| Conread position: | 1-286 |
| Cow position: | chrX:29045001-29044716 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-492 |
| Cow position: | chrX:13826689-13826198 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 49 |
| Conread position: | 1-675 |
| Cow position: | chrX:25324908-25324234 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 110 |
| Conread position: | 1-703 |
| Cow position: | chrX:25325496-25324795 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 410 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 114, 107 |
| Conread position: | 1-704 |
| Cow position: | chrX:25309813-25310516 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 437 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 4-592 |
| Cow position: | chrX:25324821-25324233 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 334 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-592 |
| Cow position: | chrX:29045250-29044662 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 353 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 4-718 |
| Cow position: | chrX:25325409-25324695 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 33 |
| Conread position: | 4-742 |
| Cow position: | chrX:25324987-25324251 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 453, 10 |
| Conread position: | 5-672 |
| Cow position: | chrX:25309901-25310568 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 215 |
| Conread position: | 5-673 |
| Cow position: | chrX:29045333-29044664 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 402 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 5-717 |
| Cow position: | chrX:25309733-25310445 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 304 |
| Conread position: | 7-694 |
| Cow position: | chrX:13826851-13826164 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 9-283 |
| Cow position: | chrX:14181291-14181017 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 9-716 |
| Cow position: | chrX:25325068-25324361 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 103 |
| Conread position: | 9-743 |
| Cow position: | chrX:25325236-25324502 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 134 |
| Conread position: | 13-742 |
| Cow position: | chrX:25325736-25325007 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 131 |
| Conread position: | 18-736 |
| Cow position: | chrX:25325563-25324845 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 184 |
| Conread position: | 57-693 |
| Cow position: | chrX:25309701-25310337 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 378 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 231, 239 |
| Conread position: | 129-611 |
| Cow position: | chrX:14181422-14180941 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 288 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 49, 7 |
| Conread position: | 133-693 |
| Cow position: | chrX:14181503-14180943 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 339 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 45, 40 |
| Conread position: | 134-743 |
| Cow position: | chrX:29045288-29044679 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 360 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 178, 182 |
| Conread position: | 147-712 |
| Cow position: | chrX:25309707-25310272 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 345 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 176-706 |
| Cow position: | chrX:13826934-13826404 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 330 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 38, 45 |
| Conread position: | 198-706 |
| Cow position: | chrX:14181606-14181098 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 304 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 114, 123 |
| Conread position: | 216-579 |
| Cow position: | chrX:29045772-29045409 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 331, 16 |
| Conread position: | 219-742 |
| Cow position: | chrX:29045287-29044764 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 119 |
| Conread position: | 309-706 |
| Cow position: | chrX:25309701-25310098 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 29, 38 |
| Conread position: | 330-704 |
| Cow position: | chrX:13826948-13826574 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 235 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 128, 119 |
| Conread position: | 384-711 |
| Cow position: | chrX:14181336-14181009 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 76, 63 |
| Conread position: | 393-743 |
| Cow position: | chrX:25309701-25310051 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 59, 66 |
| Conread position: | 411-743 |
| Cow position: | chrX:29045746-29045414 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 230, 223 |
Show alignments to all cow chromosomes.