Cow genome map
| Conread name: | Ss1.1-rcki014_i4.5 |
| Conread position: | 1-181 |
| Cow position: | chr1:43588950-43588765 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 97, 46 |
| Conread position: | 1-236 |
| Cow position: | chr1:71965060-71964824 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 106, 19 |
| Conread position: | 1-243 |
| Cow position: | chr1:89096783-89096536 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 33 |
| Conread position: | 1-343 |
| Cow position: | chr1:92045336-92045683 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 20 |
| Conread position: | 1-344 |
| Cow position: | chr1:27875709-27876053 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 33 |
| Conread position: | 1-346 |
| Cow position: | chr1:38335351-38335691 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 18, 35 |
| Conread position: | 1-346 |
| Cow position: | chr1:43584054-43584413 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 1-347 |
| Cow position: | chr1:579024-578664 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 36 |
| Conread position: | 1-371 |
| Cow position: | chr1:16389680-16390046 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 28 |
| Conread position: | 3-250 |
| Cow position: | chr1:62049852-62049593 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 10, 218 |
| Conread position: | 3-346 |
| Cow position: | chr1:3266013-3266349 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 243 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 27, 69 |
| Conread position: | 8-231 |
| Cow position: | chr1:44097198-44097425 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 27, 92 |
| Conread position: | 8-328 |
| Cow position: | chr1:91972729-91972404 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 149 |
| Conread position: | 12-231 |
| Cow position: | chr1:91777715-91777941 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 12-310 |
| Cow position: | chr1:19555244-19554939 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 28-344 |
| Cow position: | chr1:43223724-43223395 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 31-381 |
| Cow position: | chr1:1064447-1064814 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 13 |
| Conread position: | 40-209 |
| Cow position: | chr1:76595903-76596070 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 40-214 |
| Cow position: | chr1:57084336-57084161 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 53, 79 |
| Conread position: | 40-226 |
| Cow position: | chr1:84245911-84245721 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 51, 175 |
| Conread position: | 43-328 |
| Cow position: | chr1:17133686-17133975 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 106 |
| Conread position: | 43-356 |
| Cow position: | chr1:51822606-51822287 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 207 |
| Conread position: | 44-164 |
| Cow position: | chr1:79839934-79839810 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 44-208 |
| Cow position: | chr1:21993003-21993164 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 44-209 |
| Cow position: | chr1:81112812-81112644 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 55, 117 |
| Conread position: | 45-240 |
| Cow position: | chr1:14305074-14305263 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 64, 9 |
| Conread position: | 46-186 |
| Cow position: | chr1:10195309-10195166 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 47-208 |
| Cow position: | chr1:32496043-32496208 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 47-208 |
| Cow position: | chr1:81528446-81528609 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 59, 76 |
| Conread position: | 47-209 |
| Cow position: | chr1:47365085-47365254 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 51-218 |
| Cow position: | chr1:95062809-95062978 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 59-208 |
| Cow position: | chr1:91025893-91026045 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 34, 83 |
| Conread position: | 93-210 |
| Cow position: | chr1:29726233-29726115 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 68, 106 |
| Conread position: | 103-346 |
| Cow position: | chr1:45880004-45879751 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 189 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 113-324 |
| Cow position: | chr1:31519110-31518896 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 143-375 |
| Cow position: | chr1:11059581-11059336 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 37, 126 |
| Conread position: | 144-377 |
| Cow position: | chr1:73085883-73085634 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 43, 241 |
| Conread position: | 144-379 |
| Cow position: | chr1:82405782-82406026 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 90, 32 |
| Conread position: | 146-379 |
| Cow position: | chr1:40204082-40204326 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 184 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 148-379 |
| Cow position: | chr1:102649802-102650040 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 10, 211 |
| Conread position: | 158-288 |
| Cow position: | chr1:9277918-9278045 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 158-335 |
| Cow position: | chr1:67395709-67395890 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 75, 21 |
| Conread position: | 158-369 |
| Cow position: | chr1:28783652-28783444 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 45 |
| Conread position: | 158-370 |
| Cow position: | chr1:60503032-60502817 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 158-375 |
| Cow position: | chr1:84793492-84793261 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 158-375 |
| Cow position: | chr1:91669040-91669273 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 26, 223 |
| Conread position: | 158-379 |
| Cow position: | chr1:17654336-17654108 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 23, 45 |
| Conread position: | 158-379 |
| Cow position: | chr1:21321991-21322223 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 29, 205 |
| Conread position: | 158-379 |
| Cow position: | chr1:49797705-49797480 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 75, 24 |
| Conread position: | 158-379 |
| Cow position: | chr1:71107822-71108049 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 75, 10 |
| Conread position: | 158-379 |
| Cow position: | chr1:84314286-84314055 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 25, 132 |
| Conread position: | 159-379 |
| Cow position: | chr1:57533461-57533678 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 74, 17 |
| Conread position: | 159-379 |
| Cow position: | chr1:93736580-93736807 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 74, 121 |
| Conread position: | 159-384 |
| Cow position: | chr1:27972727-27972964 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 186 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 28, 206 |
| Conread position: | 160-372 |
| Cow position: | chr1:78054977-78055204 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 160-377 |
| Cow position: | chr1:6482452-6482225 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 74, 202 |
| Conread position: | 160-377 |
| Cow position: | chr1:79171067-79170846 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 27, 157 |
| Conread position: | 167-379 |
| Cow position: | chr1:1115995-1115776 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 67, 11 |
| Conread position: | 175-378 |
| Cow position: | chr1:72665958-72665736 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 6, 196 |
| Conread position: | 178-379 |
| Cow position: | chr1:45987932-45987717 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 56, 188 |
| Conread position: | 178-379 |
| Cow position: | chr1:94315354-94315141 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 55, 186 |
| Conread position: | 180-377 |
| Cow position: | chr1:36891320-36891110 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 184-377 |
| Cow position: | chr1:101713518-101713721 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 49, 53 |
| Conread position: | 184-379 |
| Cow position: | chr1:4309656-4309867 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 192-379 |
| Cow position: | chr1:8941772-8941572 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 194-379 |
| Cow position: | chr1:81152383-81152186 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 39, 185 |
| Conread position: | 201-379 |
| Cow position: | chr1:39004799-39004606 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 32, 69 |
| Conread position: | 205-374 |
| Cow position: | chr1:3412793-3412976 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 208-379 |
| Cow position: | chr1:7969466-7969649 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 25, 43 |
| Conread position: | 216-347 |
| Cow position: | chr1:44097429-44097573 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 216-379 |
| Cow position: | chr1:95316781-95316609 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 232-346 |
| Cow position: | chr1:91778299-91778421 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 232-377 |
| Cow position: | chr1:8015744-8015590 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 53, 98 |
Show alignments to all cow chromosomes.