Cow genome map
| Conread name: | Ss1.1-rcki014_i4.5 |
| Conread position: | 1-215 |
| Cow position: | chr10:17441374-17441579 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 181, 42 |
| Conread position: | 1-346 |
| Cow position: | chr10:17077110-17076764 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 20 |
| Conread position: | 1-346 |
| Cow position: | chr10:68351605-68351965 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 76 |
| Conread position: | 1-376 |
| Cow position: | chr10:32324368-32323986 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 73 |
| Conread position: | 1-379 |
| Cow position: | chr10:28021647-28022015 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 94 |
| Conread position: | 1-379 |
| Cow position: | chr10:31820593-31820965 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 192 |
| Conread position: | 2-130 |
| Cow position: | chr10:15515924-15515793 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 4-308 |
| Cow position: | chr10:26932180-26932502 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 89, 31 |
| Conread position: | 4-346 |
| Cow position: | chr10:8231141-8231495 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 89, 16 |
| Conread position: | 5-269 |
| Cow position: | chr10:6650643-6650388 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 31 |
| Conread position: | 26-347 |
| Cow position: | chr10:8690273-8689943 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 9 |
| Conread position: | 44-209 |
| Cow position: | chr10:32983611-32983433 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 44-240 |
| Cow position: | chr10:48354897-48355087 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 143, 41 |
| Conread position: | 44-379 |
| Cow position: | chr10:36036183-36035836 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 138 |
| Conread position: | 45-209 |
| Cow position: | chr10:60611190-60611021 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 43, 81 |
| Conread position: | 46-209 |
| Cow position: | chr10:32421369-32421192 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 53, 84 |
| Conread position: | 47-152 |
| Cow position: | chr10:32912473-32912580 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 49-210 |
| Cow position: | chr10:36211528-36211353 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 126-285 |
| Cow position: | chr10:15515577-15515418 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 145-379 |
| Cow position: | chr10:10264494-10264737 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 146-324 |
| Cow position: | chr10:67881890-67881707 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 37, 28 |
| Conread position: | 146-379 |
| Cow position: | chr10:18162825-18162585 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 41, 58 |
| Conread position: | 146-379 |
| Cow position: | chr10:24984602-24984362 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 87, 36 |
| Conread position: | 146-379 |
| Cow position: | chr10:58741038-58740792 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 191 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 35, 24 |
| Conread position: | 155-377 |
| Cow position: | chr10:44294036-44294270 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 79, 54 |
| Conread position: | 158-281 |
| Cow position: | chr10:7726202-7726077 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 158-371 |
| Cow position: | chr10:11417692-11417471 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 23, 106 |
| Conread position: | 158-376 |
| Cow position: | chr10:27183600-27183829 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 184 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 29, 45 |
| Conread position: | 158-376 |
| Cow position: | chr10:68196637-68196849 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 132, 59 |
| Conread position: | 158-377 |
| Cow position: | chr10:16721839-16721613 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 214 |
| Conread position: | 158-377 |
| Cow position: | chr10:67866411-67866650 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 158-380 |
| Cow position: | chr10:50363558-50363336 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 28, 108 |
| Conread position: | 159-375 |
| Cow position: | chr10:7745828-7745601 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 160-379 |
| Cow position: | chr10:48640324-48640556 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 20, 205 |
| Conread position: | 160-379 |
| Cow position: | chr10:49707560-49707318 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 161-334 |
| Cow position: | chr10:67698835-67698663 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 26, 7 |
| Conread position: | 161-378 |
| Cow position: | chr10:27736582-27736810 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 162-346 |
| Cow position: | chr10:19593755-19593559 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 25, 52 |
| Conread position: | 181-356 |
| Cow position: | chr10:64581957-64581766 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 196-379 |
| Cow position: | chr10:12738168-12738362 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 37, 165 |
| Conread position: | 207-375 |
| Cow position: | chr10:29092066-29091888 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 45 |
| Conread position: | 211-347 |
| Cow position: | chr10:17443226-17443375 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 23, 0 |
Show alignments to all cow chromosomes.