Cow genome map

Conread name: Ss1.1-rcki014_i4.5

Conread position: 1-323
Cow position: chr11:64888322-64887987 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 65

Conread position: 1-346
Cow position: chr11:2421527-2421169 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 41

Conread position: 1-346
Cow position: chr11:26368416-26368047 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 268
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 92, 34

Conread position: 1-346
Cow position: chr11:48662558-48662919 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 211

Conread position: 1-346
Cow position: chr11:73450232-73450592 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 180

Conread position: 1-378
Cow position: chr11:37032085-37032470 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 18

Conread position: 3-345
Cow position: chr11:55010673-55011032 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 3-345
Cow position: chr11:82102790-82103140 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 38

Conread position: 10-348
Cow position: chr11:75260257-75259906 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 25

Conread position: 20-334
Cow position: chr11:32776959-32777296 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 249
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 78, 15

Conread position: 24-347
Cow position: chr11:16197531-16197853 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 11

Conread position: 33-193
Cow position: chr11:34413762-34413925 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 66, 88

Conread position: 35-331
Cow position: chr11:40620868-40620573 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 32

Conread position: 44-210
Cow position: chr11:5144201-5144369 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 137
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 49, 113

Conread position: 44-210
Cow position: chr11:5251758-5251927 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 137
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 49, 107

Conread position: 44-213
Cow position: chr11:17706803-17706631 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 142
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 57, 49

Conread position: 44-226
Cow position: chr11:5188517-5188333 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 67, 129

Conread position: 44-288
Cow position: chr11:64841729-64841495 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 65

Conread position: 45-346
Cow position: chr11:37916062-37915745 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 132

Conread position: 46-206
Cow position: chr11:75202188-75202030 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 136, 12

Conread position: 46-210
Cow position: chr11:6605104-6604937 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 137
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 53, 12

Conread position: 46-232
Cow position: chr11:18480600-18480784 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 146
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 136, 63

Conread position: 47-173
Cow position: chr11:70012573-70012702 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 47-209
Cow position: chr11:11683066-11682901 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 62, 0

Conread position: 47-209
Cow position: chr11:33918234-33918059 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 52, 37

Conread position: 47-210
Cow position: chr11:36901173-36901339 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 61, 11

Conread position: 47-216
Cow position: chr11:11602389-11602570 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 71

Conread position: 47-238
Cow position: chr11:85727900-85728104 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 60, 79

Conread position: 47-377
Cow position: chr11:42471720-42472067 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 216

Conread position: 61-239
Cow position: chr11:32601028-32600846 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 149
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 48, 112

Conread position: 80-226
Cow position: chr11:61286769-61286918 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 30, 134

Conread position: 141-344
Cow position: chr11:51329669-51329454 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 173
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 46, 69

Conread position: 144-377
Cow position: chr11:62398128-62397881 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 175
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 89, 38

Conread position: 146-345
Cow position: chr11:35649286-35649077 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 44, 30

Conread position: 146-352
Cow position: chr11:61518708-61518928 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 161
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 42, 0

Conread position: 146-379
Cow position: chr11:76939365-76939125 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 187
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 87, 32

Conread position: 156-379
Cow position: chr11:4396365-4396595 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 183
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 78, 20

Conread position: 158-309
Cow position: chr11:8476776-8476929 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 30, 0

Conread position: 158-311
Cow position: chr11:85710504-85710658 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 24, 142

Conread position: 158-375
Cow position: chr11:28243056-28242827 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 173
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 25, 45

Conread position: 158-375
Cow position: chr11:68981915-68982146 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 180
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 29, 0

Conread position: 158-376
Cow position: chr11:36239269-36239491 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 199

Conread position: 158-376
Cow position: chr11:74535226-74535008 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 177
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 29, 54

Conread position: 158-377
Cow position: chr11:35428554-35428788 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 178
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 24, 18

Conread position: 158-379
Cow position: chr11:5615811-5616046 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 158-379
Cow position: chr11:7437391-7437162 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 76, 12

Conread position: 158-379
Cow position: chr11:30544663-30544435 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 175
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 75, 18

Conread position: 158-379
Cow position: chr11:60204549-60204343 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 167
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 24, 0

Conread position: 158-379
Cow position: chr11:73386312-73386539 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 178
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 75, 18

Conread position: 159-379
Cow position: chr11:5161860-5161623 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 182
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 28, 210

Conread position: 160-377
Cow position: chr11:4593092-4593304 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 175
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 22, 123

Conread position: 160-377
Cow position: chr11:38643468-38643237 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 180
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 23, 0

Conread position: 160-378
Cow position: chr11:70794816-70795048 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 174
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 73, 0

Conread position: 160-379
Cow position: chr11:37008403-37008631 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 176
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 21, 0

Conread position: 160-379
Cow position: chr11:80807010-80807242 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 173
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 74, 0

Conread position: 162-377
Cow position: chr11:71988990-71988773 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 173
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 24, 118

Conread position: 169-379
Cow position: chr11:44149194-44148972 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 174
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 14, 195

Conread position: 187-362
Cow position: chr11:35643389-35643577 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 46, 0

Conread position: 188-379
Cow position: chr11:1926437-1926253 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 45, 108

Conread position: 188-379
Cow position: chr11:7911427-7911630 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 157
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 45, 176

Conread position: 225-379
Cow position: chr11:34296064-34296226 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 8, 135

Conread position: 226-346
Cow position: chr11:85728209-85728340 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 108
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 61, 0

Show alignments to all cow chromosomes.