Cow genome map
Conread name: | Ss1.1-rcki014_i4.5 |
Conread position: | 1-323 |
Cow position: | chr11:64888322-64887987 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 65 |
Conread position: | 1-346 |
Cow position: | chr11:2421527-2421169 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 98, 41 |
Conread position: | 1-346 |
Cow position: | chr11:26368416-26368047 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 268 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 92, 34 |
Conread position: | 1-346 |
Cow position: | chr11:48662558-48662919 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 101, 211 |
Conread position: | 1-346 |
Cow position: | chr11:73450232-73450592 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 180 |
Conread position: | 1-378 |
Cow position: | chr11:37032085-37032470 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 306 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 109, 18 |
Conread position: | 3-345 |
Cow position: | chr11:55010673-55011032 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 96, 0 |
Conread position: | 3-345 |
Cow position: | chr11:82102790-82103140 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 38 |
Conread position: | 10-348 |
Cow position: | chr11:75260257-75259906 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 25 |
Conread position: | 20-334 |
Cow position: | chr11:32776959-32777296 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 249 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 78, 15 |
Conread position: | 24-347 |
Cow position: | chr11:16197531-16197853 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 11 |
Conread position: | 33-193 |
Cow position: | chr11:34413762-34413925 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 122 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 66, 88 |
Conread position: | 35-331 |
Cow position: | chr11:40620868-40620573 (view UCSC Genome Browser custom track) |
Alignm length: | 301 |
Alignm identity: | 219 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 66, 32 |
Conread position: | 44-210 |
Cow position: | chr11:5144201-5144369 (view UCSC Genome Browser custom track) |
Alignm length: | 173 |
Alignm identity: | 137 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 49, 113 |
Conread position: | 44-210 |
Cow position: | chr11:5251758-5251927 (view UCSC Genome Browser custom track) |
Alignm length: | 171 |
Alignm identity: | 137 |
Alignm E-value: | 4e-35 |
Alignm gaps (pig, cow): | 49, 107 |
Conread position: | 44-213 |
Cow position: | chr11:17706803-17706631 (view UCSC Genome Browser custom track) |
Alignm length: | 174 |
Alignm identity: | 142 |
Alignm E-value: | 6e-39 |
Alignm gaps (pig, cow): | 57, 49 |
Conread position: | 44-226 |
Cow position: | chr11:5188517-5188333 (view UCSC Genome Browser custom track) |
Alignm length: | 187 |
Alignm identity: | 141 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 67, 129 |
Conread position: | 44-288 |
Cow position: | chr11:64841729-64841495 (view UCSC Genome Browser custom track) |
Alignm length: | 247 |
Alignm identity: | 194 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 139, 65 |
Conread position: | 45-346 |
Cow position: | chr11:37916062-37915745 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 132 |
Conread position: | 46-206 |
Cow position: | chr11:75202188-75202030 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 123 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 136, 12 |
Conread position: | 46-210 |
Cow position: | chr11:6605104-6604937 (view UCSC Genome Browser custom track) |
Alignm length: | 169 |
Alignm identity: | 137 |
Alignm E-value: | 5e-37 |
Alignm gaps (pig, cow): | 53, 12 |
Conread position: | 46-232 |
Cow position: | chr11:18480600-18480784 (view UCSC Genome Browser custom track) |
Alignm length: | 189 |
Alignm identity: | 146 |
Alignm E-value: | 4e-35 |
Alignm gaps (pig, cow): | 136, 63 |
Conread position: | 47-173 |
Cow position: | chr11:70012573-70012702 (view UCSC Genome Browser custom track) |
Alignm length: | 130 |
Alignm identity: | 101 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 46, 0 |
Conread position: | 47-209 |
Cow position: | chr11:11683066-11682901 (view UCSC Genome Browser custom track) |
Alignm length: | 166 |
Alignm identity: | 128 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 62, 0 |
Conread position: | 47-209 |
Cow position: | chr11:33918234-33918059 (view UCSC Genome Browser custom track) |
Alignm length: | 177 |
Alignm identity: | 132 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 52, 37 |
Conread position: | 47-210 |
Cow position: | chr11:36901173-36901339 (view UCSC Genome Browser custom track) |
Alignm length: | 168 |
Alignm identity: | 129 |
Alignm E-value: | 7e-30 |
Alignm gaps (pig, cow): | 61, 11 |
Conread position: | 47-216 |
Cow position: | chr11:11602389-11602570 (view UCSC Genome Browser custom track) |
Alignm length: | 184 |
Alignm identity: | 138 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 52, 71 |
Conread position: | 47-238 |
Cow position: | chr11:85727900-85728104 (view UCSC Genome Browser custom track) |
Alignm length: | 206 |
Alignm identity: | 153 |
Alignm E-value: | 6e-28 |
Alignm gaps (pig, cow): | 60, 79 |
Conread position: | 47-377 |
Cow position: | chr11:42471720-42472067 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 216 |
Conread position: | 61-239 |
Cow position: | chr11:32601028-32600846 (view UCSC Genome Browser custom track) |
Alignm length: | 186 |
Alignm identity: | 149 |
Alignm E-value: | 5e-36 |
Alignm gaps (pig, cow): | 48, 112 |
Conread position: | 80-226 |
Cow position: | chr11:61286769-61286918 (view UCSC Genome Browser custom track) |
Alignm length: | 151 |
Alignm identity: | 114 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 30, 134 |
Conread position: | 141-344 |
Cow position: | chr11:51329669-51329454 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 173 |
Alignm E-value: | 3.00018e-42 |
Alignm gaps (pig, cow): | 46, 69 |
Conread position: | 144-377 |
Cow position: | chr11:62398128-62397881 (view UCSC Genome Browser custom track) |
Alignm length: | 252 |
Alignm identity: | 175 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 89, 38 |
Conread position: | 146-345 |
Cow position: | chr11:35649286-35649077 (view UCSC Genome Browser custom track) |
Alignm length: | 211 |
Alignm identity: | 156 |
Alignm E-value: | 8e-31 |
Alignm gaps (pig, cow): | 44, 30 |
Conread position: | 146-352 |
Cow position: | chr11:61518708-61518928 (view UCSC Genome Browser custom track) |
Alignm length: | 221 |
Alignm identity: | 161 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 146-379 |
Cow position: | chr11:76939365-76939125 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 187 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 87, 32 |
Conread position: | 156-379 |
Cow position: | chr11:4396365-4396595 (view UCSC Genome Browser custom track) |
Alignm length: | 236 |
Alignm identity: | 183 |
Alignm E-value: | 3.00004e-41 |
Alignm gaps (pig, cow): | 78, 20 |
Conread position: | 158-309 |
Cow position: | chr11:8476776-8476929 (view UCSC Genome Browser custom track) |
Alignm length: | 154 |
Alignm identity: | 119 |
Alignm E-value: | 7e-29 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 158-311 |
Cow position: | chr11:85710504-85710658 (view UCSC Genome Browser custom track) |
Alignm length: | 156 |
Alignm identity: | 122 |
Alignm E-value: | 7e-30 |
Alignm gaps (pig, cow): | 24, 142 |
Conread position: | 158-375 |
Cow position: | chr11:28243056-28242827 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 173 |
Alignm E-value: | 4e-34 |
Alignm gaps (pig, cow): | 25, 45 |
Conread position: | 158-375 |
Cow position: | chr11:68981915-68982146 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 180 |
Alignm E-value: | 9.00054e-42 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 158-376 |
Cow position: | chr11:36239269-36239491 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 179 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 199 |
Conread position: | 158-376 |
Cow position: | chr11:74535226-74535008 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 177 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 29, 54 |
Conread position: | 158-377 |
Cow position: | chr11:35428554-35428788 (view UCSC Genome Browser custom track) |
Alignm length: | 236 |
Alignm identity: | 178 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 24, 18 |
Conread position: | 158-379 |
Cow position: | chr11:5615811-5616046 (view UCSC Genome Browser custom track) |
Alignm length: | 236 |
Alignm identity: | 187 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 0 |
Conread position: | 158-379 |
Cow position: | chr11:7437391-7437162 (view UCSC Genome Browser custom track) |
Alignm length: | 235 |
Alignm identity: | 168 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 76, 12 |
Conread position: | 158-379 |
Cow position: | chr11:30544663-30544435 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 175 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 75, 18 |
Conread position: | 158-379 |
Cow position: | chr11:60204549-60204343 (view UCSC Genome Browser custom track) |
Alignm length: | 222 |
Alignm identity: | 167 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 24, 0 |
Conread position: | 158-379 |
Cow position: | chr11:73386312-73386539 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 178 |
Alignm E-value: | 5e-36 |
Alignm gaps (pig, cow): | 75, 18 |
Conread position: | 159-379 |
Cow position: | chr11:5161860-5161623 (view UCSC Genome Browser custom track) |
Alignm length: | 239 |
Alignm identity: | 182 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 28, 210 |
Conread position: | 160-377 |
Cow position: | chr11:4593092-4593304 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 175 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 22, 123 |
Conread position: | 160-377 |
Cow position: | chr11:38643468-38643237 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 180 |
Alignm E-value: | 3.00018e-42 |
Alignm gaps (pig, cow): | 23, 0 |
Conread position: | 160-378 |
Cow position: | chr11:70794816-70795048 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 174 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 73, 0 |
Conread position: | 160-379 |
Cow position: | chr11:37008403-37008631 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 176 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 21, 0 |
Conread position: | 160-379 |
Cow position: | chr11:80807010-80807242 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 173 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 74, 0 |
Conread position: | 162-377 |
Cow position: | chr11:71988990-71988773 (view UCSC Genome Browser custom track) |
Alignm length: | 222 |
Alignm identity: | 173 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 24, 118 |
Conread position: | 169-379 |
Cow position: | chr11:44149194-44148972 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 174 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 14, 195 |
Conread position: | 187-362 |
Cow position: | chr11:35643389-35643577 (view UCSC Genome Browser custom track) |
Alignm length: | 189 |
Alignm identity: | 144 |
Alignm E-value: | 7e-30 |
Alignm gaps (pig, cow): | 46, 0 |
Conread position: | 188-379 |
Cow position: | chr11:1926437-1926253 (view UCSC Genome Browser custom track) |
Alignm length: | 194 |
Alignm identity: | 138 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 45, 108 |
Conread position: | 188-379 |
Cow position: | chr11:7911427-7911630 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 157 |
Alignm E-value: | 3e-33 |
Alignm gaps (pig, cow): | 45, 176 |
Conread position: | 225-379 |
Cow position: | chr11:34296064-34296226 (view UCSC Genome Browser custom track) |
Alignm length: | 164 |
Alignm identity: | 128 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 8, 135 |
Conread position: | 226-346 |
Cow position: | chr11:85728209-85728340 (view UCSC Genome Browser custom track) |
Alignm length: | 132 |
Alignm identity: | 108 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 61, 0 |
Show alignments to all cow chromosomes.