Cow genome map
| Conread name: | Ss1.1-rcki014_i4.5 |
| Conread position: | 1-226 |
| Cow position: | chr12:32954857-32955082 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 1-228 |
| Cow position: | chr12:28545495-28545272 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 34 |
| Conread position: | 1-241 |
| Cow position: | chr12:30922374-30922129 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 1-317 |
| Cow position: | chr12:12175878-12175548 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 94, 22 |
| Conread position: | 1-346 |
| Cow position: | chr12:19382822-19383183 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 38 |
| Conread position: | 1-346 |
| Cow position: | chr12:30190169-30189813 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 34 |
| Conread position: | 1-347 |
| Cow position: | chr12:15383116-15383477 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 35 |
| Conread position: | 1-375 |
| Cow position: | chr12:36596610-36596993 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 34 |
| Conread position: | 2-346 |
| Cow position: | chr12:24176774-24176427 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 18 |
| Conread position: | 8-334 |
| Cow position: | chr12:13024929-13025282 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 26 |
| Conread position: | 12-326 |
| Cow position: | chr12:24544852-24545174 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 13-346 |
| Cow position: | chr12:12010194-12010537 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 25 |
| Conread position: | 18-346 |
| Cow position: | chr12:19189896-19189559 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 195 |
| Conread position: | 26-339 |
| Cow position: | chr12:1435737-1435408 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 167 |
| Conread position: | 40-209 |
| Cow position: | chr12:43226695-43226524 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 44-204 |
| Cow position: | chr12:34408528-34408693 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 54, 89 |
| Conread position: | 47-209 |
| Cow position: | chr12:43972071-43972236 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 158 |
| Conread position: | 84-346 |
| Cow position: | chr12:4475142-4475418 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 185 |
| Conread position: | 111-333 |
| Cow position: | chr12:39318050-39318282 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 70, 99 |
| Conread position: | 127-346 |
| Cow position: | chr12:5964093-5963864 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 61, 87 |
| Conread position: | 135-379 |
| Cow position: | chr12:10787608-10787351 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 144-379 |
| Cow position: | chr12:8125820-8126064 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 89, 46 |
| Conread position: | 146-376 |
| Cow position: | chr12:12025506-12025263 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 146-377 |
| Cow position: | chr12:6268420-6268663 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 146-377 |
| Cow position: | chr12:33561786-33561545 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 146-379 |
| Cow position: | chr12:27902511-27902745 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 87, 29 |
| Conread position: | 147-382 |
| Cow position: | chr12:45178435-45178186 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 15, 247 |
| Conread position: | 154-378 |
| Cow position: | chr12:30271323-30271090 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 79, 28 |
| Conread position: | 158-369 |
| Cow position: | chr12:10353954-10354185 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 158-374 |
| Cow position: | chr12:44952514-44952288 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 29, 56 |
| Conread position: | 158-375 |
| Cow position: | chr12:16913534-16913756 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 147, 33 |
| Conread position: | 158-377 |
| Cow position: | chr12:4309295-4309529 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 158-377 |
| Cow position: | chr12:11934733-11934504 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 23, 36 |
| Conread position: | 158-377 |
| Cow position: | chr12:44476992-44476766 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 158-379 |
| Cow position: | chr12:3588375-3588609 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 29, 194 |
| Conread position: | 158-379 |
| Cow position: | chr12:27729858-27729623 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 158-379 |
| Cow position: | chr12:34544313-34544078 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 123 |
| Conread position: | 158-382 |
| Cow position: | chr12:6068919-6068682 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 185 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 169-379 |
| Cow position: | chr12:15743417-15743194 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 13, 196 |
| Conread position: | 175-346 |
| Cow position: | chr12:47270705-47270520 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 35 |
| Conread position: | 178-352 |
| Cow position: | chr12:18131838-18132024 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 178-379 |
| Cow position: | chr12:25434062-25433850 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 55, 185 |
| Conread position: | 191-381 |
| Cow position: | chr12:39640259-39640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 233-375 |
| Cow position: | chr12:30921925-30921771 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 244-379 |
| Cow position: | chr12:3919685-3919541 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 126 |
Show alignments to all cow chromosomes.