Cow genome map
| Conread name: | Ss1.1-rcki014_i4.5 |
| Conread position: | 1-319 |
| Cow position: | chr13:41843378-41843067 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 264 |
| Conread position: | 1-346 |
| Cow position: | chr13:16571073-16570720 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 42 |
| Conread position: | 1-346 |
| Cow position: | chr13:52282141-52282489 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 34 |
| Conread position: | 1-379 |
| Cow position: | chr13:61030829-61031221 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 30 |
| Conread position: | 8-242 |
| Cow position: | chr13:61895143-61894905 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 101, 22 |
| Conread position: | 8-346 |
| Cow position: | chr13:19546252-19546603 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 27 |
| Conread position: | 36-346 |
| Cow position: | chr13:16045679-16045993 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 63, 205 |
| Conread position: | 46-157 |
| Cow position: | chr13:47664420-47664306 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 46-232 |
| Cow position: | chr13:51924682-51924854 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 47, 105 |
| Conread position: | 47-176 |
| Cow position: | chr13:389985-390118 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 47-209 |
| Cow position: | chr13:22946450-22946607 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 52, 116 |
| Conread position: | 47-209 |
| Cow position: | chr13:45304860-45305024 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 52, 76 |
| Conread position: | 47-226 |
| Cow position: | chr13:30330076-30329898 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 113, 39 |
| Conread position: | 48-232 |
| Cow position: | chr13:52288490-52288666 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 132, 41 |
| Conread position: | 48-374 |
| Cow position: | chr13:53161396-53161720 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 120 |
| Conread position: | 53-240 |
| Cow position: | chr13:43360403-43360592 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 53, 104 |
| Conread position: | 81-346 |
| Cow position: | chr13:19534591-19534312 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 11 |
| Conread position: | 82-303 |
| Cow position: | chr13:8617232-8617008 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 19, 138 |
| Conread position: | 92-358 |
| Cow position: | chr13:31494904-31494631 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 17 |
| Conread position: | 105-328 |
| Cow position: | chr13:5274294-5274062 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 73, 110 |
| Conread position: | 120-344 |
| Cow position: | chr13:43703402-43703169 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 60, 8 |
| Conread position: | 142-379 |
| Cow position: | chr13:49536857-49537100 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 45, 118 |
| Conread position: | 146-376 |
| Cow position: | chr13:15702630-15702871 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 146-377 |
| Cow position: | chr13:12765939-12766179 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 146-379 |
| Cow position: | chr13:2335894-2336134 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 186 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 37, 30 |
| Conread position: | 146-379 |
| Cow position: | chr13:42125417-42125658 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 88, 30 |
| Conread position: | 154-361 |
| Cow position: | chr13:61822761-61822548 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 36, 22 |
| Conread position: | 154-376 |
| Cow position: | chr13:17882057-17882281 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 185 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 28, 47 |
| Conread position: | 158-273 |
| Cow position: | chr13:12319675-12319558 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 158-368 |
| Cow position: | chr13:17170237-17170019 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 172 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 158-375 |
| Cow position: | chr13:25812922-25812710 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 170 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 75, 145 |
| Conread position: | 158-376 |
| Cow position: | chr13:22070975-22071207 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 15, 65 |
| Conread position: | 158-377 |
| Cow position: | chr13:1234394-1234627 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 185 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 29, 204 |
| Conread position: | 158-377 |
| Cow position: | chr13:10798699-10798471 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 158-377 |
| Cow position: | chr13:20704721-20704505 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 25, 87 |
| Conread position: | 158-377 |
| Cow position: | chr13:54779103-54779333 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 24, 10 |
| Conread position: | 158-379 |
| Cow position: | chr13:822710-822942 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 158-379 |
| Cow position: | chr13:1421540-1421764 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 29, 10 |
| Conread position: | 158-379 |
| Cow position: | chr13:54325868-54326103 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 26, 209 |
| Conread position: | 158-383 |
| Cow position: | chr13:13760407-13760646 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 29, 12 |
| Conread position: | 159-352 |
| Cow position: | chr13:18318198-18317992 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 28, 35 |
| Conread position: | 159-379 |
| Cow position: | chr13:27108790-27108556 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 165-297 |
| Cow position: | chr13:26182840-26182976 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 178-379 |
| Cow position: | chr13:28649552-28649757 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 178-379 |
| Cow position: | chr13:32715913-32715705 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 112, 53 |
| Conread position: | 178-379 |
| Cow position: | chr13:52218041-52218234 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 55, 91 |
| Conread position: | 191-334 |
| Cow position: | chr13:52442217-52442373 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 203-377 |
| Cow position: | chr13:43189805-43189976 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 30, 47 |
| Conread position: | 213-379 |
| Cow position: | chr13:26487890-26487712 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 42 |
| Conread position: | 233-376 |
| Cow position: | chr13:43360868-43361016 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 57, 0 |
Show alignments to all cow chromosomes.