Cow genome map
| Conread name: | Ss1.1-rcki014_i4.5 |
| Conread position: | 1-330 |
| Cow position: | chr14:121693-121351 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 250 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 66, 34 |
| Conread position: | 1-345 |
| Cow position: | chr14:26474089-26473746 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 31 |
| Conread position: | 1-346 |
| Cow position: | chr14:7940232-7939873 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 171 |
| Conread position: | 1-346 |
| Cow position: | chr14:16814025-16813695 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 36 |
| Conread position: | 8-355 |
| Cow position: | chr14:37115877-37116248 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 277 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 53, 27 |
| Conread position: | 26-151 |
| Cow position: | chr14:3751531-3751657 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 83, 9 |
| Conread position: | 43-210 |
| Cow position: | chr14:24445631-24445461 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 56, 100 |
| Conread position: | 44-226 |
| Cow position: | chr14:24206459-24206645 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 66, 171 |
| Conread position: | 44-234 |
| Cow position: | chr14:5363111-5363299 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 49, 124 |
| Conread position: | 47-209 |
| Cow position: | chr14:9229084-9228917 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 47-346 |
| Cow position: | chr14:10082528-10082841 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 11 |
| Conread position: | 48-209 |
| Cow position: | chr14:25934665-25934493 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 50-228 |
| Cow position: | chr14:8033117-8032940 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 49, 116 |
| Conread position: | 57-208 |
| Cow position: | chr14:12337513-12337360 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 59-346 |
| Cow position: | chr14:7950883-7950594 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 40 |
| Conread position: | 103-357 |
| Cow position: | chr14:32920822-32920572 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 85, 107 |
| Conread position: | 146-379 |
| Cow position: | chr14:19813695-19813449 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 188 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 41, 129 |
| Conread position: | 158-332 |
| Cow position: | chr14:12339739-12339561 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 158-334 |
| Cow position: | chr14:1786611-1786799 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 158-375 |
| Cow position: | chr14:40016809-40017041 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 158-377 |
| Cow position: | chr14:17144880-17144653 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 75, 12 |
| Conread position: | 158-377 |
| Cow position: | chr14:24935237-24935024 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 158-379 |
| Cow position: | chr14:21555249-21555011 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 160-376 |
| Cow position: | chr14:3751849-3752076 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 160-377 |
| Cow position: | chr14:22912684-22912457 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 27, 54 |
| Conread position: | 162-361 |
| Cow position: | chr14:11963258-11963468 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 167-378 |
| Cow position: | chr14:27624237-27624017 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 67, 11 |
| Conread position: | 167-379 |
| Cow position: | chr14:15673934-15673712 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 67, 11 |
| Conread position: | 178-374 |
| Cow position: | chr14:40025979-40025772 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 56, 186 |
| Conread position: | 178-379 |
| Cow position: | chr14:5495400-5495205 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 55, 40 |
| Conread position: | 178-379 |
| Cow position: | chr14:7730140-7729926 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 178-379 |
| Cow position: | chr14:15828808-15828594 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 52, 187 |
| Conread position: | 184-379 |
| Cow position: | chr14:15028037-15027833 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 49, 177 |
| Conread position: | 211-347 |
| Cow position: | chr14:14077007-14076859 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 23, 37 |
Show alignments to all cow chromosomes.