Cow genome map
Conread name: | Ss1.1-rcki014_i4.5 |
Conread position: | 1-189 |
Cow position: | chr16:5428166-5428367 (view UCSC Genome Browser custom track) |
Alignm length: | 203 |
Alignm identity: | 149 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 92, 33 |
Conread position: | 1-241 |
Cow position: | chr16:5249641-5249397 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 187 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 126 |
Conread position: | 1-346 |
Cow position: | chr16:9252389-9252774 (view UCSC Genome Browser custom track) |
Alignm length: | 387 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 118 |
Conread position: | 1-346 |
Cow position: | chr16:15878760-15879106 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 186 |
Conread position: | 1-346 |
Cow position: | chr16:54011686-54011338 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 262 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 22, 77 |
Conread position: | 4-346 |
Cow position: | chr16:24571125-24571495 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 262 |
Alignm E-value: | 4e-39 |
Alignm gaps (pig, cow): | 89, 31 |
Conread position: | 8-332 |
Cow position: | chr16:33129181-33129505 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 174, 80 |
Conread position: | 8-347 |
Cow position: | chr16:30800368-30800002 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 35 |
Conread position: | 23-346 |
Cow position: | chr16:49898397-49898736 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 198 |
Conread position: | 37-231 |
Cow position: | chr16:8786528-8786726 (view UCSC Genome Browser custom track) |
Alignm length: | 200 |
Alignm identity: | 149 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 62, 178 |
Conread position: | 44-157 |
Cow position: | chr16:7770575-7770460 (view UCSC Genome Browser custom track) |
Alignm length: | 117 |
Alignm identity: | 94 |
Alignm E-value: | 6e-22 |
Alignm gaps (pig, cow): | 55, 77 |
Conread position: | 44-376 |
Cow position: | chr16:33426736-33426388 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 21 |
Conread position: | 45-308 |
Cow position: | chr16:45572992-45572725 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 217 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 17 |
Conread position: | 46-209 |
Cow position: | chr16:10444559-10444395 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 120 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 139, 0 |
Conread position: | 46-379 |
Cow position: | chr16:15126132-15125794 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 90 |
Conread position: | 47-209 |
Cow position: | chr16:27974445-27974613 (view UCSC Genome Browser custom track) |
Alignm length: | 169 |
Alignm identity: | 128 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 52, 0 |
Conread position: | 47-226 |
Cow position: | chr16:19937624-19937439 (view UCSC Genome Browser custom track) |
Alignm length: | 188 |
Alignm identity: | 141 |
Alignm E-value: | 4e-27 |
Alignm gaps (pig, cow): | 111, 68 |
Conread position: | 47-226 |
Cow position: | chr16:26065834-26065651 (view UCSC Genome Browser custom track) |
Alignm length: | 186 |
Alignm identity: | 142 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 52, 95 |
Conread position: | 47-317 |
Cow position: | chr16:46403984-46403705 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 202 |
Alignm E-value: | 4e-29 |
Alignm gaps (pig, cow): | 27, 111 |
Conread position: | 47-377 |
Cow position: | chr16:32884849-32884502 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 0 |
Conread position: | 47-379 |
Cow position: | chr16:33595105-33594757 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 0 |
Conread position: | 55-269 |
Cow position: | chr16:30712438-30712665 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 164 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 43, 97 |
Conread position: | 73-359 |
Cow position: | chr16:6160227-6160526 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 239 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 93 |
Conread position: | 103-353 |
Cow position: | chr16:43501791-43502035 (view UCSC Genome Browser custom track) |
Alignm length: | 253 |
Alignm identity: | 188 |
Alignm E-value: | 5e-40 |
Alignm gaps (pig, cow): | 78, 7 |
Conread position: | 104-346 |
Cow position: | chr16:52928382-52928631 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 194 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 78, 110 |
Conread position: | 105-346 |
Cow position: | chr16:9574892-9575151 (view UCSC Genome Browser custom track) |
Alignm length: | 260 |
Alignm identity: | 199 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 31, 0 |
Conread position: | 146-367 |
Cow position: | chr16:33986199-33986434 (view UCSC Genome Browser custom track) |
Alignm length: | 236 |
Alignm identity: | 177 |
Alignm E-value: | 4e-38 |
Alignm gaps (pig, cow): | 27, 0 |
Conread position: | 146-378 |
Cow position: | chr16:17597921-17597691 (view UCSC Genome Browser custom track) |
Alignm length: | 238 |
Alignm identity: | 176 |
Alignm E-value: | 3e-36 |
Alignm gaps (pig, cow): | 87, 30 |
Conread position: | 147-379 |
Cow position: | chr16:12525698-12525940 (view UCSC Genome Browser custom track) |
Alignm length: | 244 |
Alignm identity: | 186 |
Alignm E-value: | 7.00649e-44 |
Alignm gaps (pig, cow): | 62, 29 |
Conread position: | 154-377 |
Cow position: | chr16:43165014-43164779 (view UCSC Genome Browser custom track) |
Alignm length: | 238 |
Alignm identity: | 182 |
Alignm E-value: | 5e-40 |
Alignm gaps (pig, cow): | 33, 196 |
Conread position: | 158-307 |
Cow position: | chr16:34760571-34760724 (view UCSC Genome Browser custom track) |
Alignm length: | 154 |
Alignm identity: | 125 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 24, 0 |
Conread position: | 158-367 |
Cow position: | chr16:3593198-3592980 (view UCSC Genome Browser custom track) |
Alignm length: | 222 |
Alignm identity: | 170 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 25, 15 |
Conread position: | 158-370 |
Cow position: | chr16:6087380-6087606 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 175 |
Alignm E-value: | 3e-37 |
Alignm gaps (pig, cow): | 29, 209 |
Conread position: | 158-377 |
Cow position: | chr16:56872144-56872376 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 179 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 76, 0 |
Conread position: | 158-378 |
Cow position: | chr16:16436012-16436240 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 174 |
Alignm E-value: | 7e-33 |
Alignm gaps (pig, cow): | 75, 21 |
Conread position: | 158-379 |
Cow position: | chr16:16429865-16430095 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 175 |
Alignm E-value: | 3e-36 |
Alignm gaps (pig, cow): | 29, 204 |
Conread position: | 158-379 |
Cow position: | chr16:39220193-39219966 (view UCSC Genome Browser custom track) |
Alignm length: | 231 |
Alignm identity: | 179 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 26, 187 |
Conread position: | 158-383 |
Cow position: | chr16:26791237-26790985 (view UCSC Genome Browser custom track) |
Alignm length: | 253 |
Alignm identity: | 190 |
Alignm E-value: | 7e-34 |
Alignm gaps (pig, cow): | 25, 0 |
Conread position: | 159-376 |
Cow position: | chr16:35035803-35035571 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 184 |
Alignm E-value: | 8.40779e-45 |
Alignm gaps (pig, cow): | 24, 0 |
Conread position: | 159-379 |
Cow position: | chr16:20497187-20497421 (view UCSC Genome Browser custom track) |
Alignm length: | 236 |
Alignm identity: | 174 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 23, 17 |
Conread position: | 160-374 |
Cow position: | chr16:9569813-9569593 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 173 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 73, 19 |
Conread position: | 160-376 |
Cow position: | chr16:11810884-11810654 (view UCSC Genome Browser custom track) |
Alignm length: | 231 |
Alignm identity: | 177 |
Alignm E-value: | 5e-40 |
Alignm gaps (pig, cow): | 27, 0 |
Conread position: | 160-377 |
Cow position: | chr16:3929939-3929712 (view UCSC Genome Browser custom track) |
Alignm length: | 231 |
Alignm identity: | 172 |
Alignm E-value: | 7e-34 |
Alignm gaps (pig, cow): | 73, 42 |
Conread position: | 160-377 |
Cow position: | chr16:6083804-6084034 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 181 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 22, 206 |
Conread position: | 160-379 |
Cow position: | chr16:42046884-42046652 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 177 |
Alignm E-value: | 4e-38 |
Alignm gaps (pig, cow): | 27, 205 |
Conread position: | 161-379 |
Cow position: | chr16:30680643-30680870 (view UCSC Genome Browser custom track) |
Alignm length: | 231 |
Alignm identity: | 173 |
Alignm E-value: | 3e-36 |
Alignm gaps (pig, cow): | 72, 21 |
Conread position: | 162-379 |
Cow position: | chr16:25612067-25611842 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 166 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 25, 14 |
Conread position: | 162-379 |
Cow position: | chr16:25616248-25616021 (view UCSC Genome Browser custom track) |
Alignm length: | 231 |
Alignm identity: | 168 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 71, 99 |
Conread position: | 175-379 |
Cow position: | chr16:41581528-41581315 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 173 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 0 |
Conread position: | 178-346 |
Cow position: | chr16:5429458-5429638 (view UCSC Genome Browser custom track) |
Alignm length: | 182 |
Alignm identity: | 144 |
Alignm E-value: | 6e-32 |
Alignm gaps (pig, cow): | 40, 31 |
Conread position: | 178-379 |
Cow position: | chr16:19031000-19031208 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 161 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 55, 66 |
Conread position: | 204-309 |
Cow position: | chr16:32171696-32171587 (view UCSC Genome Browser custom track) |
Alignm length: | 110 |
Alignm identity: | 93 |
Alignm E-value: | 8e-24 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 233-347 |
Cow position: | chr16:5249184-5249058 (view UCSC Genome Browser custom track) |
Alignm length: | 127 |
Alignm identity: | 103 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 50, 0 |
Conread position: | 233-379 |
Cow position: | chr16:17755700-17755544 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 122 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 57, 129 |
Show alignments to all cow chromosomes.