Cow genome map

Conread name: Ss1.1-rcki014_i4.5

Conread position: 1-189
Cow position: chr16:5428166-5428367 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 92, 33

Conread position: 1-241
Cow position: chr16:5249641-5249397 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 126

Conread position: 1-346
Cow position: chr16:9252389-9252774 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 118

Conread position: 1-346
Cow position: chr16:15878760-15879106 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 186

Conread position: 1-346
Cow position: chr16:54011686-54011338 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 262
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 22, 77

Conread position: 4-346
Cow position: chr16:24571125-24571495 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 262
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 89, 31

Conread position: 8-332
Cow position: chr16:33129181-33129505 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 80

Conread position: 8-347
Cow position: chr16:30800368-30800002 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 35

Conread position: 23-346
Cow position: chr16:49898397-49898736 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 198

Conread position: 37-231
Cow position: chr16:8786528-8786726 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 149
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 62, 178

Conread position: 44-157
Cow position: chr16:7770575-7770460 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 55, 77

Conread position: 44-376
Cow position: chr16:33426736-33426388 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 21

Conread position: 45-308
Cow position: chr16:45572992-45572725 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 17

Conread position: 46-209
Cow position: chr16:10444559-10444395 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 139, 0

Conread position: 46-379
Cow position: chr16:15126132-15125794 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 90

Conread position: 47-209
Cow position: chr16:27974445-27974613 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 47-226
Cow position: chr16:19937624-19937439 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 111, 68

Conread position: 47-226
Cow position: chr16:26065834-26065651 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 52, 95

Conread position: 47-317
Cow position: chr16:46403984-46403705 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 202
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 27, 111

Conread position: 47-377
Cow position: chr16:32884849-32884502 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 47-379
Cow position: chr16:33595105-33594757 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 55-269
Cow position: chr16:30712438-30712665 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 43, 97

Conread position: 73-359
Cow position: chr16:6160227-6160526 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 93

Conread position: 103-353
Cow position: chr16:43501791-43502035 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 188
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 78, 7

Conread position: 104-346
Cow position: chr16:52928382-52928631 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 194
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 78, 110

Conread position: 105-346
Cow position: chr16:9574892-9575151 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 199
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 31, 0

Conread position: 146-367
Cow position: chr16:33986199-33986434 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 177
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 27, 0

Conread position: 146-378
Cow position: chr16:17597921-17597691 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 176
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 87, 30

Conread position: 147-379
Cow position: chr16:12525698-12525940 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 186
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 62, 29

Conread position: 154-377
Cow position: chr16:43165014-43164779 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 182
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 33, 196

Conread position: 158-307
Cow position: chr16:34760571-34760724 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 125
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 24, 0

Conread position: 158-367
Cow position: chr16:3593198-3592980 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 170
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 25, 15

Conread position: 158-370
Cow position: chr16:6087380-6087606 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 175
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 29, 209

Conread position: 158-377
Cow position: chr16:56872144-56872376 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 179
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 76, 0

Conread position: 158-378
Cow position: chr16:16436012-16436240 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 174
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 75, 21

Conread position: 158-379
Cow position: chr16:16429865-16430095 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 175
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 29, 204

Conread position: 158-379
Cow position: chr16:39220193-39219966 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 179
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 26, 187

Conread position: 158-383
Cow position: chr16:26791237-26790985 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 190
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 25, 0

Conread position: 159-376
Cow position: chr16:35035803-35035571 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 184
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 24, 0

Conread position: 159-379
Cow position: chr16:20497187-20497421 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 174
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 23, 17

Conread position: 160-374
Cow position: chr16:9569813-9569593 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 73, 19

Conread position: 160-376
Cow position: chr16:11810884-11810654 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 177
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 27, 0

Conread position: 160-377
Cow position: chr16:3929939-3929712 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 172
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 73, 42

Conread position: 160-377
Cow position: chr16:6083804-6084034 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 181
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 22, 206

Conread position: 160-379
Cow position: chr16:42046884-42046652 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 177
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 27, 205

Conread position: 161-379
Cow position: chr16:30680643-30680870 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 173
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 72, 21

Conread position: 162-379
Cow position: chr16:25612067-25611842 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 166
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 25, 14

Conread position: 162-379
Cow position: chr16:25616248-25616021 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 168
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 71, 99

Conread position: 175-379
Cow position: chr16:41581528-41581315 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 178-346
Cow position: chr16:5429458-5429638 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 144
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 40, 31

Conread position: 178-379
Cow position: chr16:19031000-19031208 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 55, 66

Conread position: 204-309
Cow position: chr16:32171696-32171587 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 93
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 233-347
Cow position: chr16:5249184-5249058 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 233-379
Cow position: chr16:17755700-17755544 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 57, 129

Show alignments to all cow chromosomes.