Cow genome map
| Conread name: | Ss1.1-rcki014_i4.5 |
| Conread position: | 1-346 |
| Cow position: | chr17:13381673-13382045 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 270 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 1-346 |
| Cow position: | chr17:38875083-38874722 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 17 |
| Conread position: | 3-241 |
| Cow position: | chr17:22581595-22581837 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 168 |
| Conread position: | 3-379 |
| Cow position: | chr17:12740034-12739651 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 24 |
| Conread position: | 3-379 |
| Cow position: | chr17:21613491-21613856 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 106, 22 |
| Conread position: | 40-209 |
| Cow position: | chr17:1491089-1491255 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 117 |
| Conread position: | 40-209 |
| Cow position: | chr17:1730057-1730229 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 61, 29 |
| Conread position: | 42-280 |
| Cow position: | chr17:43466115-43466367 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 44-209 |
| Cow position: | chr17:1757115-1756947 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 44-209 |
| Cow position: | chr17:22823162-22822991 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 54, 23 |
| Conread position: | 44-209 |
| Cow position: | chr17:41950198-41950355 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 135, 47 |
| Conread position: | 44-333 |
| Cow position: | chr17:25546424-25546139 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 55, 176 |
| Conread position: | 44-375 |
| Cow position: | chr17:25557119-25556803 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 31 |
| Conread position: | 45-195 |
| Cow position: | chr17:892097-891943 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 45-209 |
| Cow position: | chr17:11051817-11051994 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 54, 76 |
| Conread position: | 45-209 |
| Cow position: | chr17:11124822-11124661 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 54, 111 |
| Conread position: | 45-210 |
| Cow position: | chr17:5348427-5348260 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 46-194 |
| Cow position: | chr17:29040177-29040330 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 46-209 |
| Cow position: | chr17:42337558-42337729 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 46-310 |
| Cow position: | chr17:21605487-21605224 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 83 |
| Conread position: | 47-209 |
| Cow position: | chr17:6762944-6763110 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 47-214 |
| Cow position: | chr17:21460811-21460980 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 142 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 62, 166 |
| Conread position: | 47-226 |
| Cow position: | chr17:17642050-17641867 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 33, 164 |
| Conread position: | 47-378 |
| Cow position: | chr17:23564835-23565175 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 92 |
| Conread position: | 50-374 |
| Cow position: | chr17:22043032-22043362 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 111 |
| Conread position: | 51-240 |
| Cow position: | chr17:17449354-17449160 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 57-241 |
| Cow position: | chr17:33548005-33548192 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 29, 124 |
| Conread position: | 106-346 |
| Cow position: | chr17:22511464-22511710 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 34 |
| Conread position: | 113-379 |
| Cow position: | chr17:6841435-6841163 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 206 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 176, 63 |
| Conread position: | 143-379 |
| Cow position: | chr17:21423920-21423677 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 90, 40 |
| Conread position: | 146-379 |
| Cow position: | chr17:11828786-11829031 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 42, 221 |
| Conread position: | 146-379 |
| Cow position: | chr17:28083985-28083748 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 87, 36 |
| Conread position: | 157-379 |
| Cow position: | chr17:12553115-12553342 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 76, 19 |
| Conread position: | 158-376 |
| Cow position: | chr17:21480073-21479840 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 158-376 |
| Cow position: | chr17:25190603-25190377 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 29, 12 |
| Conread position: | 158-376 |
| Cow position: | chr17:44533143-44532917 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 76, 21 |
| Conread position: | 158-377 |
| Cow position: | chr17:7329539-7329335 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 158-377 |
| Cow position: | chr17:11390733-11390501 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 158-377 |
| Cow position: | chr17:26222520-26222290 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 28 |
| Conread position: | 158-378 |
| Cow position: | chr17:19975556-19975329 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 75, 10 |
| Conread position: | 158-379 |
| Cow position: | chr17:11189232-11189466 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 32, 207 |
| Conread position: | 158-379 |
| Cow position: | chr17:36145709-36145929 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 72, 24 |
| Conread position: | 166-294 |
| Cow position: | chr17:25515523-25515393 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 173-379 |
| Cow position: | chr17:45885385-45885605 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 60, 193 |
| Conread position: | 176-379 |
| Cow position: | chr17:6881101-6880886 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 57, 188 |
| Conread position: | 179-378 |
| Cow position: | chr17:3764433-3764224 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 8, 149 |
| Conread position: | 189-376 |
| Cow position: | chr17:2694310-2694100 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 213-376 |
| Cow position: | chr17:9047818-9047642 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 115 |
| Conread position: | 213-381 |
| Cow position: | chr17:30769393-30769571 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 20, 142 |
| Conread position: | 227-346 |
| Cow position: | chr17:22522629-22522748 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 75, 11 |
| Conread position: | 236-379 |
| Cow position: | chr17:17449004-17448849 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 54, 0 |
Show alignments to all cow chromosomes.