Cow genome map
| Conread name: | Ss1.1-rcki014_i4.5 |
| Conread position: | 1-268 |
| Cow position: | chr18:38329886-38329617 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 73 |
| Conread position: | 1-308 |
| Cow position: | chr18:10050860-10051182 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 34 |
| Conread position: | 1-376 |
| Cow position: | chr18:2783078-2783481 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 278 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 29, 38 |
| Conread position: | 2-286 |
| Cow position: | chr18:23430979-23431258 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 108 |
| Conread position: | 3-265 |
| Cow position: | chr18:49899072-49899333 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 25 |
| Conread position: | 8-346 |
| Cow position: | chr18:46864105-46864444 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 26 |
| Conread position: | 12-347 |
| Cow position: | chr18:1387545-1387207 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 90, 23 |
| Conread position: | 44-194 |
| Cow position: | chr18:51786019-51786171 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 49, 113 |
| Conread position: | 46-209 |
| Cow position: | chr18:21549076-21549248 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 46-376 |
| Cow position: | chr18:11234716-11234380 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 64 |
| Conread position: | 47-292 |
| Cow position: | chr18:35508229-35508470 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 69 |
| Conread position: | 48-194 |
| Cow position: | chr18:5770876-5770717 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 49-209 |
| Cow position: | chr18:44505164-44505335 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 50, 72 |
| Conread position: | 52-333 |
| Cow position: | chr18:43820760-43820471 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 41, 176 |
| Conread position: | 75-358 |
| Cow position: | chr18:42288570-42288874 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 139 |
| Conread position: | 89-346 |
| Cow position: | chr18:4503759-4504032 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 122 |
| Conread position: | 120-376 |
| Cow position: | chr18:47274900-47275162 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 67, 21 |
| Conread position: | 146-379 |
| Cow position: | chr18:39547632-39547392 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 189 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 87, 22 |
| Conread position: | 146-379 |
| Cow position: | chr18:45118713-45118958 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 44, 37 |
| Conread position: | 146-379 |
| Cow position: | chr18:56036844-56037092 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 157-379 |
| Cow position: | chr18:48219254-48219027 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 25, 210 |
| Conread position: | 158-376 |
| Cow position: | chr18:32048024-32048258 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 185 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 158-378 |
| Cow position: | chr18:22652391-22652629 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 176-361 |
| Cow position: | chr18:49048341-49048537 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 178-379 |
| Cow position: | chr18:37738242-37738454 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 55, 154 |
| Conread position: | 189-379 |
| Cow position: | chr18:45109691-45109892 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 44, 174 |
| Conread position: | 206-355 |
| Cow position: | chr18:39080779-39080622 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 28, 154 |
| Conread position: | 224-379 |
| Cow position: | chr18:49898172-49898334 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 49, 9 |
| Conread position: | 229-378 |
| Cow position: | chr18:49081059-49080900 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 57, 133 |
Show alignments to all cow chromosomes.