Cow genome map
| Conread name: | Ss1.1-rcki014_i4.5 |
| Conread position: | 1-130 |
| Cow position: | chr19:46626598-46626466 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 22, 34 |
| Conread position: | 1-189 |
| Cow position: | chr19:44738600-44738788 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 12, 83 |
| Conread position: | 1-244 |
| Cow position: | chr19:14544202-14543959 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 24 |
| Conread position: | 1-255 |
| Cow position: | chr19:2602631-2602380 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 31, 200 |
| Conread position: | 1-328 |
| Cow position: | chr19:21747453-21747110 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 18 |
| Conread position: | 1-346 |
| Cow position: | chr19:2477822-2478174 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 35 |
| Conread position: | 1-346 |
| Cow position: | chr19:22688553-22688913 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 34 |
| Conread position: | 2-226 |
| Cow position: | chr19:33735132-33734908 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 11, 36 |
| Conread position: | 3-269 |
| Cow position: | chr19:26678575-26678297 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 3-327 |
| Cow position: | chr19:33517408-33517742 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 4-269 |
| Cow position: | chr19:8450791-8451074 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 6, 33 |
| Conread position: | 5-334 |
| Cow position: | chr19:24244090-24243761 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 181, 69 |
| Conread position: | 8-334 |
| Cow position: | chr19:18937517-18937858 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 35 |
| Conread position: | 17-313 |
| Cow position: | chr19:48049838-48049539 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 92, 275 |
| Conread position: | 43-358 |
| Cow position: | chr19:2772111-2771813 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 65 |
| Conread position: | 44-175 |
| Cow position: | chr19:2815671-2815802 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 122, 74 |
| Conread position: | 46-198 |
| Cow position: | chr19:25960074-25959933 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 47-207 |
| Cow position: | chr19:7671370-7671531 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 53, 74 |
| Conread position: | 47-209 |
| Cow position: | chr19:33743625-33743782 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 109 |
| Conread position: | 109-346 |
| Cow position: | chr19:26950690-26950943 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 65, 58 |
| Conread position: | 146-381 |
| Cow position: | chr19:49863838-49863609 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 157-346 |
| Cow position: | chr19:9881446-9881643 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 158-359 |
| Cow position: | chr19:39626370-39626582 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 158-368 |
| Cow position: | chr19:45578483-45578260 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 158-371 |
| Cow position: | chr19:25992097-25992321 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 28, 202 |
| Conread position: | 158-376 |
| Cow position: | chr19:54835873-54835642 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 179 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 158-377 |
| Cow position: | chr19:7582492-7582723 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 24, 12 |
| Conread position: | 158-377 |
| Cow position: | chr19:25540458-25540228 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 24, 179 |
| Conread position: | 158-379 |
| Cow position: | chr19:20712738-20712501 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 158-379 |
| Cow position: | chr19:36464771-36464545 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 78, 18 |
| Conread position: | 158-379 |
| Cow position: | chr19:51619228-51619460 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 23, 10 |
| Conread position: | 159-376 |
| Cow position: | chr19:45999715-45999501 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 75, 100 |
| Conread position: | 160-379 |
| Cow position: | chr19:51785691-51785922 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 73, 29 |
| Conread position: | 165-375 |
| Cow position: | chr19:52730934-52731156 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 168-376 |
| Cow position: | chr19:9044260-9044491 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 13, 100 |
| Conread position: | 179-345 |
| Cow position: | chr19:9535769-9535949 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 54, 30 |
| Conread position: | 184-377 |
| Cow position: | chr19:23039727-23039521 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 165 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 188-376 |
| Cow position: | chr19:6555684-6555883 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 140 |
| Conread position: | 188-377 |
| Cow position: | chr19:18655855-18656056 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 45, 168 |
| Conread position: | 196-379 |
| Cow position: | chr19:6443027-6443208 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 37, 87 |
| Conread position: | 196-379 |
| Cow position: | chr19:19012993-19012803 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 37, 131 |
| Conread position: | 203-376 |
| Cow position: | chr19:398088-397903 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 30, 156 |
| Conread position: | 216-375 |
| Cow position: | chr19:47777869-47777700 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 17, 148 |
| Conread position: | 222-376 |
| Cow position: | chr19:25118098-25117935 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 11, 41 |
| Conread position: | 234-379 |
| Cow position: | chr19:34669650-34669502 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 56, 101 |
| Conread position: | 239-379 |
| Cow position: | chr19:11609677-11609825 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 251-377 |
| Cow position: | chr19:35045775-35045902 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
Show alignments to all cow chromosomes.