Cow genome map
| Conread name: | Ss1.1-rcki014_i4.5 |
| Conread position: | 1-219 |
| Cow position: | chr2:57449394-57449173 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 35, 129 |
| Conread position: | 1-226 |
| Cow position: | chr2:86527719-86527949 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 94, 33 |
| Conread position: | 1-317 |
| Cow position: | chr2:74897304-74896972 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 8, 37 |
| Conread position: | 1-332 |
| Cow position: | chr2:44204306-44203967 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 35 |
| Conread position: | 1-346 |
| Cow position: | chr2:39790271-39790616 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 142 |
| Conread position: | 1-346 |
| Cow position: | chr2:40474076-40473717 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 34 |
| Conread position: | 1-346 |
| Cow position: | chr2:76037823-76037467 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 34 |
| Conread position: | 1-346 |
| Cow position: | chr2:76048079-76048432 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 28 |
| Conread position: | 1-346 |
| Cow position: | chr2:82928638-82928984 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 109 |
| Conread position: | 2-317 |
| Cow position: | chr2:6938790-6939109 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 32 |
| Conread position: | 3-240 |
| Cow position: | chr2:45308664-45308905 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 3-346 |
| Cow position: | chr2:82137467-82137133 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 96 |
| Conread position: | 7-346 |
| Cow position: | chr2:39796722-39796375 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 27 |
| Conread position: | 7-347 |
| Cow position: | chr2:23608014-23607658 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 16 |
| Conread position: | 8-309 |
| Cow position: | chr2:5483454-5483759 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 234 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 24, 32 |
| Conread position: | 8-346 |
| Cow position: | chr2:39580347-39580009 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 30 |
| Conread position: | 10-253 |
| Cow position: | chr2:45007882-45007627 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 33, 212 |
| Conread position: | 34-208 |
| Cow position: | chr2:41697256-41697446 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 65, 14 |
| Conread position: | 40-209 |
| Cow position: | chr2:38897123-38897290 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 143, 30 |
| Conread position: | 44-167 |
| Cow position: | chr2:72603941-72603808 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 44-196 |
| Cow position: | chr2:46025244-46025399 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 127 |
| Conread position: | 44-206 |
| Cow position: | chr2:70829528-70829693 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 44-208 |
| Cow position: | chr2:54448440-54448610 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 35 |
| Conread position: | 45-209 |
| Cow position: | chr2:66981885-66982050 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 46-208 |
| Cow position: | chr2:46409026-46408850 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 47-209 |
| Cow position: | chr2:39578856-39579018 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 20, 73 |
| Conread position: | 47-225 |
| Cow position: | chr2:30639426-30639604 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 134, 161 |
| Conread position: | 47-308 |
| Cow position: | chr2:35995059-35994793 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 48, 38 |
| Conread position: | 47-338 |
| Cow position: | chr2:2073055-2072735 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 235 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 51, 179 |
| Conread position: | 47-376 |
| Cow position: | chr2:46267150-46267502 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 48-196 |
| Cow position: | chr2:28574041-28574192 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 34 |
| Conread position: | 76-210 |
| Cow position: | chr2:46008734-46008597 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 23, 61 |
| Conread position: | 84-347 |
| Cow position: | chr2:65780664-65780387 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 15, 9 |
| Conread position: | 93-333 |
| Cow position: | chr2:63090499-63090262 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 98-209 |
| Cow position: | chr2:74693220-74693109 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 110-379 |
| Cow position: | chr2:19236995-19237271 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 13 |
| Conread position: | 144-379 |
| Cow position: | chr2:36972731-36972493 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 39, 79 |
| Conread position: | 146-293 |
| Cow position: | chr2:69915557-69915701 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 84, 30 |
| Conread position: | 146-356 |
| Cow position: | chr2:74180338-74180116 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 40, 106 |
| Conread position: | 146-379 |
| Cow position: | chr2:66060715-66060475 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 88, 24 |
| Conread position: | 146-379 |
| Cow position: | chr2:71501737-71501489 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 28, 79 |
| Conread position: | 154-377 |
| Cow position: | chr2:3436834-3437070 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 33, 65 |
| Conread position: | 154-379 |
| Cow position: | chr2:42278526-42278782 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 157-376 |
| Cow position: | chr2:41209438-41209195 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 157-382 |
| Cow position: | chr2:20865893-20866129 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 158-372 |
| Cow position: | chr2:46322135-46322356 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 75, 15 |
| Conread position: | 158-375 |
| Cow position: | chr2:20788601-20788828 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 84 |
| Conread position: | 158-376 |
| Cow position: | chr2:69085938-69086161 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 158-377 |
| Cow position: | chr2:67759543-67759315 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 75, 12 |
| Conread position: | 158-377 |
| Cow position: | chr2:82419232-82419464 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 24, 223 |
| Conread position: | 158-378 |
| Cow position: | chr2:47880765-47880537 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 158-379 |
| Cow position: | chr2:59057606-59057378 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 76, 12 |
| Conread position: | 158-379 |
| Cow position: | chr2:71235219-71235448 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 158-379 |
| Cow position: | chr2:76306692-76306453 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 72, 31 |
| Conread position: | 158-380 |
| Cow position: | chr2:12302936-12303156 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 30, 102 |
| Conread position: | 160-379 |
| Cow position: | chr2:15996912-15997143 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 73, 221 |
| Conread position: | 167-377 |
| Cow position: | chr2:48975358-48975150 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 66, 122 |
| Conread position: | 167-379 |
| Cow position: | chr2:47178309-47178088 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 211 |
| Conread position: | 178-379 |
| Cow position: | chr2:44356554-44356765 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 56, 186 |
| Conread position: | 178-379 |
| Cow position: | chr2:68627223-68627433 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 52, 78 |
| Conread position: | 188-379 |
| Cow position: | chr2:54926392-54926186 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 31, 179 |
| Conread position: | 196-379 |
| Cow position: | chr2:26508312-26508120 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 37, 167 |
| Conread position: | 207-379 |
| Cow position: | chr2:32959042-32958859 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 26, 156 |
| Conread position: | 220-379 |
| Cow position: | chr2:47769060-47769228 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 13, 0 |
Show alignments to all cow chromosomes.