Cow genome map
| Conread name: | Ss1.1-rcki014_i4.5 |
| Conread position: | 1-195 |
| Cow position: | chr21:4510312-4510115 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 98, 43 |
| Conread position: | 1-334 |
| Cow position: | chr21:1598121-1597783 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 39 |
| Conread position: | 1-341 |
| Cow position: | chr21:26575822-26576175 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 122 |
| Conread position: | 1-345 |
| Cow position: | chr21:2988613-2988254 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 183 |
| Conread position: | 1-346 |
| Cow position: | chr21:3790084-3789734 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 89 |
| Conread position: | 1-376 |
| Cow position: | chr21:2854799-2854410 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 108 |
| Conread position: | 8-332 |
| Cow position: | chr21:13391298-13391621 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 13 |
| Conread position: | 35-226 |
| Cow position: | chr21:8850904-8851093 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 74, 104 |
| Conread position: | 44-209 |
| Cow position: | chr21:6134851-6134684 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 55, 83 |
| Conread position: | 44-209 |
| Cow position: | chr21:20786204-20786035 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 65, 89 |
| Conread position: | 44-226 |
| Cow position: | chr21:7074374-7074188 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 55, 171 |
| Conread position: | 44-233 |
| Cow position: | chr21:6326856-6326664 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 64, 187 |
| Conread position: | 46-210 |
| Cow position: | chr21:44721746-44721912 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 77 |
| Conread position: | 47-218 |
| Cow position: | chr21:24735576-24735405 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 52, 80 |
| Conread position: | 47-376 |
| Cow position: | chr21:24428935-24429284 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 51-209 |
| Cow position: | chr21:41548292-41548131 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 48, 70 |
| Conread position: | 58-209 |
| Cow position: | chr21:23639859-23639708 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 35, 97 |
| Conread position: | 80-358 |
| Cow position: | chr21:2523382-2523674 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 69 |
| Conread position: | 127-377 |
| Cow position: | chr21:9975453-9975190 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 35, 238 |
| Conread position: | 146-377 |
| Cow position: | chr21:30090562-30090332 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 160 |
| Conread position: | 146-377 |
| Cow position: | chr21:41506086-41505847 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 88, 214 |
| Conread position: | 146-379 |
| Cow position: | chr21:8913265-8913020 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 218 |
| Conread position: | 154-379 |
| Cow position: | chr21:3763234-3762994 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 79, 22 |
| Conread position: | 157-379 |
| Cow position: | chr21:19372531-19372774 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 157-379 |
| Cow position: | chr21:39736421-39736657 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 158-332 |
| Cow position: | chr21:22054611-22054417 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 158-369 |
| Cow position: | chr21:15642365-15642583 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 75, 24 |
| Conread position: | 158-376 |
| Cow position: | chr21:39251186-39251417 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 28, 86 |
| Conread position: | 158-376 |
| Cow position: | chr21:41838300-41838529 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 30, 207 |
| Conread position: | 158-377 |
| Cow position: | chr21:11734923-11734687 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 158-378 |
| Cow position: | chr21:12907367-12907606 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 26, 213 |
| Conread position: | 158-378 |
| Cow position: | chr21:32432514-32432747 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 25, 208 |
| Conread position: | 158-379 |
| Cow position: | chr21:1270051-1270275 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 76, 10 |
| Conread position: | 158-379 |
| Cow position: | chr21:8907076-8906844 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 29, 192 |
| Conread position: | 158-379 |
| Cow position: | chr21:14780263-14780489 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 182 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 29, 199 |
| Conread position: | 158-379 |
| Cow position: | chr21:36641115-36641351 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 75, 35 |
| Conread position: | 158-379 |
| Cow position: | chr21:39277493-39277722 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 76, 24 |
| Conread position: | 158-380 |
| Cow position: | chr21:25759821-25759588 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 25, 38 |
| Conread position: | 159-369 |
| Cow position: | chr21:9293441-9293217 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 159-375 |
| Cow position: | chr21:21565103-21565329 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 28, 9 |
| Conread position: | 159-376 |
| Cow position: | chr21:10838388-10838158 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 159-379 |
| Cow position: | chr21:10813811-10813587 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 28, 48 |
| Conread position: | 160-374 |
| Cow position: | chr21:24983175-24983396 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 22, 96 |
| Conread position: | 160-375 |
| Cow position: | chr21:7125665-7125442 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 24 |
| Conread position: | 160-383 |
| Cow position: | chr21:41442967-41443198 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 73, 16 |
| Conread position: | 163-379 |
| Cow position: | chr21:41374499-41374717 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 71, 13 |
| Conread position: | 180-379 |
| Cow position: | chr21:25818163-25817956 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 53, 145 |
| Conread position: | 186-376 |
| Cow position: | chr21:4509910-4509714 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 47, 122 |
| Conread position: | 213-376 |
| Cow position: | chr21:32511299-32511126 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 20, 35 |
Show alignments to all cow chromosomes.