Cow genome map
| Conread name: | Ss1.1-rcki014_i4.5 |
| Conread position: | 1-240 |
| Cow position: | chr23:2284454-2284697 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 1-359 |
| Cow position: | chr23:5914667-5914303 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 34 |
| Conread position: | 8-377 |
| Cow position: | chr23:20076289-20076671 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 19 |
| Conread position: | 8-379 |
| Cow position: | chr23:4352933-4353320 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 28 |
| Conread position: | 20-218 |
| Cow position: | chr23:6591033-6591231 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 56, 19 |
| Conread position: | 26-210 |
| Cow position: | chr23:38221103-38221284 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 20, 122 |
| Conread position: | 44-209 |
| Cow position: | chr23:4785528-4785701 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 44-226 |
| Cow position: | chr23:39492085-39491900 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 65, 74 |
| Conread position: | 45-378 |
| Cow position: | chr23:36379419-36379765 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 190 |
| Conread position: | 47-209 |
| Cow position: | chr23:4506424-4506591 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 47-209 |
| Cow position: | chr23:27010272-27010442 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 52, 76 |
| Conread position: | 47-333 |
| Cow position: | chr23:3552705-3552431 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 48, 165 |
| Conread position: | 49-367 |
| Cow position: | chr23:4456409-4456077 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 175 |
| Conread position: | 50-376 |
| Cow position: | chr23:10705589-10705267 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 227 |
| Conread position: | 103-346 |
| Cow position: | chr23:2501564-2501315 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 196 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 131, 81 |
| Conread position: | 103-346 |
| Cow position: | chr23:41256943-41257200 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 71, 16 |
| Conread position: | 146-379 |
| Cow position: | chr23:5249962-5249719 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 84, 24 |
| Conread position: | 158-288 |
| Cow position: | chr23:6234113-6233981 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 158-345 |
| Cow position: | chr23:36094448-36094650 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 158-376 |
| Cow position: | chr23:15605603-15605835 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 158-376 |
| Cow position: | chr23:35714880-35715108 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 158-377 |
| Cow position: | chr23:6721144-6721392 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 158-379 |
| Cow position: | chr23:4530537-4530308 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 24, 213 |
| Conread position: | 158-379 |
| Cow position: | chr23:8193422-8193654 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 75, 223 |
| Conread position: | 158-379 |
| Cow position: | chr23:14152039-14152269 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 25, 12 |
| Conread position: | 158-379 |
| Cow position: | chr23:14321680-14321453 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 158-379 |
| Cow position: | chr23:18589585-18589811 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 75, 24 |
| Conread position: | 158-379 |
| Cow position: | chr23:30239681-30239453 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 76, 18 |
| Conread position: | 158-379 |
| Cow position: | chr23:37751613-37751847 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 75, 12 |
| Conread position: | 159-298 |
| Cow position: | chr23:4861103-4861237 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 75, 21 |
| Conread position: | 165-286 |
| Cow position: | chr23:39731347-39731468 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 69, 35 |
| Conread position: | 165-379 |
| Cow position: | chr23:40709388-40709615 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 15, 201 |
| Conread position: | 167-374 |
| Cow position: | chr23:19829897-19829678 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 178-378 |
| Cow position: | chr23:39566282-39566493 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 55, 150 |
| Conread position: | 178-379 |
| Cow position: | chr23:30243226-30243017 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 58, 171 |
| Conread position: | 184-346 |
| Cow position: | chr23:41243793-41243963 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 48, 27 |
| Conread position: | 187-308 |
| Cow position: | chr23:6727776-6727901 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 188-378 |
| Cow position: | chr23:5246958-5246757 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 42, 175 |
| Conread position: | 232-375 |
| Cow position: | chr23:40092043-40091888 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 232-377 |
| Cow position: | chr23:10684956-10684799 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 233-346 |
| Cow position: | chr23:2284917-2285033 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 50, 7 |
| Conread position: | 233-379 |
| Cow position: | chr23:17228179-17228022 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 47, 130 |
| Conread position: | 236-356 |
| Cow position: | chr23:20713488-20713613 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.