Cow genome map
| Conread name: | Ss1.1-rcki014_i4.5 |
| Conread position: | 1-347 |
| Cow position: | chr24:14537662-14537306 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 34 |
| Conread position: | 1-347 |
| Cow position: | chr24:39036560-39036911 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 34 |
| Conread position: | 3-309 |
| Cow position: | chr24:3002491-3002802 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 94, 57 |
| Conread position: | 17-346 |
| Cow position: | chr24:29502862-29502518 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 180 |
| Conread position: | 24-346 |
| Cow position: | chr24:29153609-29153942 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 247 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 47, 18 |
| Conread position: | 44-208 |
| Cow position: | chr24:18049066-18049229 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 114, 48 |
| Conread position: | 44-240 |
| Cow position: | chr24:36745944-36746136 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 139, 67 |
| Conread position: | 46-209 |
| Cow position: | chr24:27743469-27743297 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 75 |
| Conread position: | 47-150 |
| Cow position: | chr24:24158992-24159098 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 47-209 |
| Cow position: | chr24:10568653-10568500 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 137, 49 |
| Conread position: | 47-209 |
| Cow position: | chr24:28829685-28829519 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 49-209 |
| Cow position: | chr24:2454785-2454621 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 110-346 |
| Cow position: | chr24:20776478-20776241 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 70, 122 |
| Conread position: | 111-288 |
| Cow position: | chr24:36899220-36899394 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 77, 95 |
| Conread position: | 140-380 |
| Cow position: | chr24:24159216-24159470 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 146-346 |
| Cow position: | chr24:6544701-6544487 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 146-376 |
| Cow position: | chr24:5561288-5561525 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 155-379 |
| Cow position: | chr24:39795489-39795253 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 78, 15 |
| Conread position: | 155-382 |
| Cow position: | chr24:42968285-42968521 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 78, 15 |
| Conread position: | 157-346 |
| Cow position: | chr24:16204076-16203888 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 76, 35 |
| Conread position: | 157-378 |
| Cow position: | chr24:40465537-40465304 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 24, 19 |
| Conread position: | 158-358 |
| Cow position: | chr24:2114468-2114677 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 76, 203 |
| Conread position: | 158-376 |
| Cow position: | chr24:16893453-16893225 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 177 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 158-377 |
| Cow position: | chr24:10435101-10434883 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 30, 52 |
| Conread position: | 158-379 |
| Cow position: | chr24:26698112-26697874 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 158-379 |
| Cow position: | chr24:33906110-33905877 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 72, 206 |
| Conread position: | 158-379 |
| Cow position: | chr24:42657983-42657751 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 159-379 |
| Cow position: | chr24:3639825-3640053 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 74, 20 |
| Conread position: | 159-379 |
| Cow position: | chr24:26731198-26730969 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 74, 23 |
| Conread position: | 160-371 |
| Cow position: | chr24:41442155-41441931 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 30, 10 |
| Conread position: | 160-376 |
| Cow position: | chr24:8611221-8610991 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 27, 202 |
| Conread position: | 160-376 |
| Cow position: | chr24:28334906-28335133 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 73, 40 |
| Conread position: | 161-375 |
| Cow position: | chr24:28541490-28541715 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 161-379 |
| Cow position: | chr24:5519803-5520029 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 175 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 5, 199 |
| Conread position: | 162-379 |
| Cow position: | chr24:4627462-4627237 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 21, 84 |
| Conread position: | 167-371 |
| Cow position: | chr24:7875122-7874910 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 66, 24 |
| Conread position: | 167-379 |
| Cow position: | chr24:28989753-28989974 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 20, 184 |
| Conread position: | 167-380 |
| Cow position: | chr24:28748701-28748924 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 66, 11 |
| Conread position: | 178-301 |
| Cow position: | chr24:42425484-42425359 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 178-379 |
| Cow position: | chr24:39176251-39176039 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 55, 194 |
| Conread position: | 199-375 |
| Cow position: | chr24:5086872-5086685 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 229-376 |
| Cow position: | chr24:36746528-36746682 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 61, 33 |
Show alignments to all cow chromosomes.