Cow genome map
| Conread name: | Ss1.1-rcki014_i4.5 |
| Conread position: | 1-345 |
| Cow position: | chr25:12409251-12408889 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 210 |
| Conread position: | 1-379 |
| Cow position: | chr25:40632315-40631952 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 22 |
| Conread position: | 2-346 |
| Cow position: | chr25:16116977-16117339 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 211 |
| Conread position: | 3-157 |
| Cow position: | chr25:18563509-18563363 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 32 |
| Conread position: | 3-376 |
| Cow position: | chr25:7053092-7052710 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 16 |
| Conread position: | 5-263 |
| Cow position: | chr25:11408853-11409121 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 18-346 |
| Cow position: | chr25:36779971-36780298 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 18, 136 |
| Conread position: | 23-288 |
| Cow position: | chr25:9835988-9836257 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 24 |
| Conread position: | 36-379 |
| Cow position: | chr25:7493639-7493287 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 91 |
| Conread position: | 44-198 |
| Cow position: | chr25:10291988-10292147 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 55, 77 |
| Conread position: | 44-205 |
| Cow position: | chr25:9318-9153 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 44-214 |
| Cow position: | chr25:8543844-8544004 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 44-218 |
| Cow position: | chr25:11260035-11260207 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 141, 49 |
| Conread position: | 44-379 |
| Cow position: | chr25:11433914-11433563 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 112 |
| Conread position: | 45-309 |
| Cow position: | chr25:10473818-10474085 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 146 |
| Conread position: | 46-214 |
| Cow position: | chr25:14556233-14556405 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 53, 75 |
| Conread position: | 47-160 |
| Cow position: | chr25:16805986-16805871 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 59, 74 |
| Conread position: | 47-204 |
| Cow position: | chr25:15456381-15456218 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 47-206 |
| Cow position: | chr25:15656368-15656531 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 47-209 |
| Cow position: | chr25:36035036-36035199 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 47-240 |
| Cow position: | chr25:22157548-22157740 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 54, 46 |
| Conread position: | 47-277 |
| Cow position: | chr25:24444569-24444805 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 48, 166 |
| Conread position: | 47-347 |
| Cow position: | chr25:12142638-12142324 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 96 |
| Conread position: | 47-379 |
| Cow position: | chr25:12254732-12254384 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 164 |
| Conread position: | 51-345 |
| Cow position: | chr25:36818587-36818284 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 111-324 |
| Cow position: | chr25:31060553-31060773 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 31, 99 |
| Conread position: | 146-372 |
| Cow position: | chr25:17003012-17003252 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 146-375 |
| Cow position: | chr25:5309557-5309316 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 42, 100 |
| Conread position: | 146-379 |
| Cow position: | chr25:8086766-8086524 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 87, 36 |
| Conread position: | 157-379 |
| Cow position: | chr25:9523884-9523654 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 185 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 31, 89 |
| Conread position: | 158-307 |
| Cow position: | chr25:6983572-6983418 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 158-352 |
| Cow position: | chr25:37334484-37334680 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 158-371 |
| Cow position: | chr25:7823927-7823708 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 75, 24 |
| Conread position: | 158-376 |
| Cow position: | chr25:7797207-7797435 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 158-377 |
| Cow position: | chr25:16086866-16086651 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 24, 105 |
| Conread position: | 158-379 |
| Cow position: | chr25:7700494-7700265 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 158-379 |
| Cow position: | chr25:7768257-7768040 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 75, 122 |
| Conread position: | 158-379 |
| Cow position: | chr25:14334494-14334718 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 158-379 |
| Cow position: | chr25:34386859-34387096 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 34, 10 |
| Conread position: | 158-379 |
| Cow position: | chr25:34389897-34389660 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 34, 10 |
| Conread position: | 158-380 |
| Cow position: | chr25:31069898-31069679 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 75, 108 |
| Conread position: | 160-273 |
| Cow position: | chr25:33013423-33013309 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 160-377 |
| Cow position: | chr25:9844219-9844440 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 21, 118 |
| Conread position: | 167-345 |
| Cow position: | chr25:17630992-17631179 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 14, 9 |
| Conread position: | 176-379 |
| Cow position: | chr25:20252585-20252788 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 57, 117 |
| Conread position: | 178-379 |
| Cow position: | chr25:10937260-10937474 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 55, 187 |
| Conread position: | 184-374 |
| Cow position: | chr25:6451918-6451714 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 49, 182 |
| Conread position: | 184-379 |
| Cow position: | chr25:2128322-2128119 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 134 |
| Conread position: | 184-379 |
| Cow position: | chr25:6757816-6758030 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 49, 151 |
| Conread position: | 187-379 |
| Cow position: | chr25:23952154-23952359 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 188-379 |
| Cow position: | chr25:20395848-20396042 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 159 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 45, 56 |
| Conread position: | 195-379 |
| Cow position: | chr25:4678047-4677853 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 38, 133 |
| Conread position: | 236-376 |
| Cow position: | chr25:22157968-22158099 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
Show alignments to all cow chromosomes.