Cow genome map
| Conread name: | Ss1.1-rcki014_i4.5 |
| Conread position: | 1-346 |
| Cow position: | chr27:15218403-15218045 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 36 |
| Conread position: | 1-346 |
| Cow position: | chr27:22277463-22277106 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 20 |
| Conread position: | 1-346 |
| Cow position: | chr27:22630079-22629719 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 33 |
| Conread position: | 1-377 |
| Cow position: | chr27:15408705-15408314 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 22 |
| Conread position: | 41-359 |
| Cow position: | chr27:11596064-11596383 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 85 |
| Conread position: | 44-209 |
| Cow position: | chr27:26124469-26124638 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 44-209 |
| Cow position: | chr27:29673808-29673640 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 55, 40 |
| Conread position: | 44-334 |
| Cow position: | chr27:13705237-13704936 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 44-376 |
| Cow position: | chr27:24722619-24722261 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 49 |
| Conread position: | 45-210 |
| Cow position: | chr27:11478209-11478377 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 46-206 |
| Cow position: | chr27:24717622-24717780 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 52, 96 |
| Conread position: | 46-209 |
| Cow position: | chr27:29521063-29521229 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 46-376 |
| Cow position: | chr27:1791064-1791407 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 213 |
| Conread position: | 46-376 |
| Cow position: | chr27:31211861-31211527 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 140 |
| Conread position: | 47-209 |
| Cow position: | chr27:15106384-15106219 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 52, 109 |
| Conread position: | 50-375 |
| Cow position: | chr27:22441650-22441992 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 50-377 |
| Cow position: | chr27:24715953-24715617 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 98 |
| Conread position: | 51-244 |
| Cow position: | chr27:12472306-12472511 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 170 |
| Conread position: | 67-209 |
| Cow position: | chr27:4498721-4498578 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 123-379 |
| Cow position: | chr27:1644626-1644357 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 146-379 |
| Cow position: | chr27:6029821-6029580 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 87, 32 |
| Conread position: | 146-379 |
| Cow position: | chr27:9519388-9519159 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 37, 160 |
| Conread position: | 158-376 |
| Cow position: | chr27:18736840-18736615 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 25, 38 |
| Conread position: | 158-377 |
| Cow position: | chr27:28150763-28150996 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 158-378 |
| Cow position: | chr27:5169291-5169057 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 29, 209 |
| Conread position: | 158-378 |
| Cow position: | chr27:29837044-29836810 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 28, 109 |
| Conread position: | 158-379 |
| Cow position: | chr27:10070737-10070515 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 77, 18 |
| Conread position: | 158-379 |
| Cow position: | chr27:13654234-13654001 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 73, 10 |
| Conread position: | 158-379 |
| Cow position: | chr27:18497837-18498072 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 29, 213 |
| Conread position: | 158-379 |
| Cow position: | chr27:20831936-20832169 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 29, 60 |
| Conread position: | 158-379 |
| Cow position: | chr27:30467208-30466988 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 29, 125 |
| Conread position: | 158-379 |
| Cow position: | chr27:31551206-31551434 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 159-274 |
| Cow position: | chr27:24752681-24752565 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 160-376 |
| Cow position: | chr27:15471611-15471840 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 20, 205 |
| Conread position: | 160-377 |
| Cow position: | chr27:6915766-6915996 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 161-379 |
| Cow position: | chr27:22335136-22334905 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 167-378 |
| Cow position: | chr27:7134261-7134040 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 66, 28 |
| Conread position: | 178-277 |
| Cow position: | chr27:16477412-16477311 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 179-376 |
| Cow position: | chr27:6343402-6343605 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 54, 103 |
| Conread position: | 184-379 |
| Cow position: | chr27:205094-205293 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 49, 182 |
| Conread position: | 199-376 |
| Cow position: | chr27:25503306-25503494 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 205-379 |
| Cow position: | chr27:30357078-30356891 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-379 |
| Cow position: | chr27:24330661-24330814 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 239-377 |
| Cow position: | chr27:29939748-29939598 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
Show alignments to all cow chromosomes.