Cow genome map
| Conread name: | Ss1.1-rcki014_i4.5 |
| Conread position: | 2-309 |
| Cow position: | chr28:4563964-4564256 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 232 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 97, 174 |
| Conread position: | 3-319 |
| Cow position: | chr28:11209440-11209771 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 10, 21 |
| Conread position: | 12-152 |
| Cow position: | chr28:1272877-1272734 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 18-152 |
| Cow position: | chr28:8426378-8426240 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 20-377 |
| Cow position: | chr28:5709350-5709707 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 91 |
| Conread position: | 31-346 |
| Cow position: | chr28:34697244-34697566 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 132 |
| Conread position: | 44-209 |
| Cow position: | chr28:1286784-1286606 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 77 |
| Conread position: | 44-209 |
| Cow position: | chr28:18714158-18714323 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 64, 95 |
| Conread position: | 46-210 |
| Cow position: | chr28:1656445-1656625 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 53, 79 |
| Conread position: | 47-277 |
| Cow position: | chr28:11095831-11095603 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 153 |
| Conread position: | 54-209 |
| Cow position: | chr28:11279600-11279433 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 45, 67 |
| Conread position: | 146-377 |
| Cow position: | chr28:1464684-1464445 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 87, 231 |
| Conread position: | 157-383 |
| Cow position: | chr28:26861090-26861327 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 158-274 |
| Cow position: | chr28:462768-462651 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 25, 100 |
| Conread position: | 158-349 |
| Cow position: | chr28:13048882-13049077 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 158-375 |
| Cow position: | chr28:11772363-11772593 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 158-377 |
| Cow position: | chr28:5197436-5197200 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 24, 43 |
| Conread position: | 158-377 |
| Cow position: | chr28:28417842-28417609 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 158-378 |
| Cow position: | chr28:12078583-12078355 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 75, 12 |
| Conread position: | 158-378 |
| Cow position: | chr28:33322061-33321833 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 75, 23 |
| Conread position: | 158-379 |
| Cow position: | chr28:1521127-1521353 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 76, 18 |
| Conread position: | 158-379 |
| Cow position: | chr28:18493634-18493860 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 158-379 |
| Cow position: | chr28:28556194-28556430 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 183 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 158-379 |
| Cow position: | chr28:28602360-28602133 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 76, 18 |
| Conread position: | 158-379 |
| Cow position: | chr28:30048149-30048389 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 187 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 160-376 |
| Cow position: | chr28:9697201-9696980 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 23, 90 |
| Conread position: | 160-379 |
| Cow position: | chr28:26290778-26290559 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 135 |
| Conread position: | 168-326 |
| Cow position: | chr28:30418362-30418517 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 19, 91 |
| Conread position: | 172-358 |
| Cow position: | chr28:13646410-13646222 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 61, 121 |
| Conread position: | 184-379 |
| Cow position: | chr28:5978699-5978499 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 99, 49 |
| Conread position: | 188-379 |
| Cow position: | chr28:30613154-30612952 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 45, 175 |
| Conread position: | 191-379 |
| Cow position: | chr28:10144814-10145013 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 172 |
Show alignments to all cow chromosomes.