Cow genome map
| Conread name: | Ss1.1-rcki014_i4.5 |
| Conread position: | 1-346 |
| Cow position: | chr29:4885348-4885699 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 34 |
| Conread position: | 1-379 |
| Cow position: | chr29:9409628-9409235 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 36 |
| Conread position: | 2-240 |
| Cow position: | chr29:10118434-10118675 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 23 |
| Conread position: | 3-346 |
| Cow position: | chr29:14145731-14146097 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 267 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 10, 33 |
| Conread position: | 8-376 |
| Cow position: | chr29:27020470-27020818 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 69 |
| Conread position: | 24-346 |
| Cow position: | chr29:42550559-42550218 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 11 |
| Conread position: | 29-336 |
| Cow position: | chr29:41345451-41345772 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 121 |
| Conread position: | 39-208 |
| Cow position: | chr29:1627380-1627552 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 60, 167 |
| Conread position: | 43-346 |
| Cow position: | chr29:41021927-41021606 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 44-204 |
| Cow position: | chr29:24135393-24135567 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 44-208 |
| Cow position: | chr29:26946282-26946115 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 49, 98 |
| Conread position: | 44-210 |
| Cow position: | chr29:37996339-37996509 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 44-240 |
| Cow position: | chr29:37986910-37987118 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 44-379 |
| Cow position: | chr29:824248-824584 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 46 |
| Conread position: | 45-219 |
| Cow position: | chr29:29783470-29783648 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 46-209 |
| Cow position: | chr29:4669248-4669072 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 46-209 |
| Cow position: | chr29:13387084-13386909 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 21 |
| Conread position: | 46-226 |
| Cow position: | chr29:3335818-3336001 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 53, 168 |
| Conread position: | 158-352 |
| Cow position: | chr29:27114484-27114280 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 75, 24 |
| Conread position: | 158-361 |
| Cow position: | chr29:37209623-37209407 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 158-375 |
| Cow position: | chr29:1762796-1762565 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 23, 54 |
| Conread position: | 158-378 |
| Cow position: | chr29:15525379-15525609 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 7, 200 |
| Conread position: | 158-379 |
| Cow position: | chr29:1954240-1954469 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 158-379 |
| Cow position: | chr29:6323079-6323307 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 76, 18 |
| Conread position: | 158-379 |
| Cow position: | chr29:16946175-16945941 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 160-346 |
| Cow position: | chr29:34285603-34285407 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 160-376 |
| Cow position: | chr29:32201983-32201773 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 23, 106 |
| Conread position: | 161-333 |
| Cow position: | chr29:25454046-25454226 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 178-379 |
| Cow position: | chr29:19823409-19823197 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 55, 185 |
| Conread position: | 184-379 |
| Cow position: | chr29:20061271-20061471 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 49, 137 |
| Conread position: | 208-379 |
| Cow position: | chr29:4800487-4800661 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 25, 144 |
| Conread position: | 215-377 |
| Cow position: | chr29:42504713-42504541 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 18, 54 |
| Conread position: | 232-376 |
| Cow position: | chr29:37987434-37987579 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 49, 81 |
| Conread position: | 235-345 |
| Cow position: | chr29:10118888-10119003 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 236-379 |
| Cow position: | chr29:42753941-42754095 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 238-378 |
| Cow position: | chr29:14211656-14211504 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
Show alignments to all cow chromosomes.