Cow genome map
| Conread name: | Ss1.1-rcki014_i4.5 |
| Conread position: | 1-238 |
| Cow position: | chr3:28717086-28716834 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 97, 33 |
| Conread position: | 1-274 |
| Cow position: | chr3:81527196-81527483 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 85, 34 |
| Conread position: | 1-305 |
| Cow position: | chr3:60492455-60492148 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 280 |
| Conread position: | 1-344 |
| Cow position: | chr3:54563853-54563496 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 42 |
| Conread position: | 1-345 |
| Cow position: | chr3:51415048-51414690 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 86 |
| Conread position: | 1-345 |
| Cow position: | chr3:74406924-74406569 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 1-346 |
| Cow position: | chr3:9188294-9187949 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 108 |
| Conread position: | 1-379 |
| Cow position: | chr3:81991587-81991987 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 3-310 |
| Cow position: | chr3:62740284-62739974 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 17 |
| Conread position: | 8-200 |
| Cow position: | chr3:34233225-34233419 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 11-346 |
| Cow position: | chr3:29842766-29842417 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 24 |
| Conread position: | 29-371 |
| Cow position: | chr3:59579373-59579018 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 120 |
| Conread position: | 39-177 |
| Cow position: | chr3:71470869-71470729 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 70, 132 |
| Conread position: | 44-209 |
| Cow position: | chr3:21714891-21715057 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 64, 76 |
| Conread position: | 44-209 |
| Cow position: | chr3:58594857-58594688 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 44-301 |
| Cow position: | chr3:63496224-63495955 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 8 |
| Conread position: | 44-358 |
| Cow position: | chr3:7146401-7146725 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 29 |
| Conread position: | 45-206 |
| Cow position: | chr3:40566833-40567007 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 46-209 |
| Cow position: | chr3:74797080-74797250 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 52-332 |
| Cow position: | chr3:41407816-41408115 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 41, 9 |
| Conread position: | 66-346 |
| Cow position: | chr3:36747996-36747702 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 283 |
| Conread position: | 78-346 |
| Cow position: | chr3:21277992-21278258 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 42 |
| Conread position: | 114-345 |
| Cow position: | chr3:28629846-28630089 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 94 |
| Conread position: | 115-346 |
| Cow position: | chr3:60535805-60535566 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 169 |
| Conread position: | 143-379 |
| Cow position: | chr3:81576933-81576682 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 144-361 |
| Cow position: | chr3:23654521-23654296 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 90, 35 |
| Conread position: | 146-374 |
| Cow position: | chr3:13636421-13636661 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 37, 205 |
| Conread position: | 146-379 |
| Cow position: | chr3:67824170-67824400 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 87, 30 |
| Conread position: | 146-380 |
| Cow position: | chr3:2085790-2085547 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 84, 22 |
| Conread position: | 152-374 |
| Cow position: | chr3:32185661-32185424 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 158-288 |
| Cow position: | chr3:44569829-44569697 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 158-334 |
| Cow position: | chr3:30245930-30245740 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 158-377 |
| Cow position: | chr3:24156341-24156570 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 29, 98 |
| Conread position: | 158-377 |
| Cow position: | chr3:48566129-48565895 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 158-378 |
| Cow position: | chr3:6950100-6950321 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 75, 21 |
| Conread position: | 158-378 |
| Cow position: | chr3:24503378-24503604 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 75, 10 |
| Conread position: | 158-379 |
| Cow position: | chr3:5640970-5640742 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 158-379 |
| Cow position: | chr3:23034879-23035110 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 76, 51 |
| Conread position: | 158-379 |
| Cow position: | chr3:33158740-33158960 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 158-381 |
| Cow position: | chr3:2119499-2119265 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 160-375 |
| Cow position: | chr3:81368150-81368370 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 173 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 73, 106 |
| Conread position: | 160-377 |
| Cow position: | chr3:48337785-48337562 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 165-375 |
| Cow position: | chr3:54325343-54325569 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 167-282 |
| Cow position: | chr3:38705667-38705550 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 178-379 |
| Cow position: | chr3:77691860-77692067 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 55, 145 |
| Conread position: | 188-379 |
| Cow position: | chr3:45171331-45171537 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 42, 180 |
| Conread position: | 216-379 |
| Cow position: | chr3:70485701-70485539 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 17, 77 |
| Conread position: | 240-376 |
| Cow position: | chr3:84149360-84149508 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.