Cow genome map
| Conread name: | Ss1.1-rcki014_i4.5 |
| Conread position: | 1-192 |
| Cow position: | chr4:11011684-11011876 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 35, 155 |
| Conread position: | 1-347 |
| Cow position: | chr4:43404280-43404638 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 29 |
| Conread position: | 1-379 |
| Cow position: | chr4:32008747-32008357 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 179 |
| Conread position: | 2-344 |
| Cow position: | chr4:68407340-68406985 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 108 |
| Conread position: | 2-366 |
| Cow position: | chr4:21005892-21005519 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 8-345 |
| Cow position: | chr4:23690387-23690722 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 27 |
| Conread position: | 44-180 |
| Cow position: | chr4:2684885-2685024 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 44-227 |
| Cow position: | chr4:11689560-11689741 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 55, 77 |
| Conread position: | 44-359 |
| Cow position: | chr4:53659190-53658863 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 241 |
| Conread position: | 44-376 |
| Cow position: | chr4:121659-122007 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 222 |
| Conread position: | 47-209 |
| Cow position: | chr4:61680342-61680507 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 47-209 |
| Cow position: | chr4:63082473-63082649 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 47-234 |
| Cow position: | chr4:45986486-45986676 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 46, 167 |
| Conread position: | 47-376 |
| Cow position: | chr4:44847176-44847513 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 110 |
| Conread position: | 59-210 |
| Cow position: | chr4:40252315-40252470 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 59-346 |
| Cow position: | chr4:42962058-42961765 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 223 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 25, 155 |
| Conread position: | 69-345 |
| Cow position: | chr4:10861146-10861426 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 26 |
| Conread position: | 113-346 |
| Cow position: | chr4:62625435-62625204 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 120, 96 |
| Conread position: | 157-379 |
| Cow position: | chr4:43350980-43351211 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 25, 57 |
| Conread position: | 158-298 |
| Cow position: | chr4:67174716-67174855 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 91 |
| Conread position: | 158-345 |
| Cow position: | chr4:57262861-57262660 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 158-346 |
| Cow position: | chr4:19447582-19447378 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 22, 120 |
| Conread position: | 158-376 |
| Cow position: | chr4:29654-29867 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 25, 12 |
| Conread position: | 158-379 |
| Cow position: | chr4:4952239-4952012 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 158-379 |
| Cow position: | chr4:13516036-13515802 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 158-379 |
| Cow position: | chr4:16007023-16007244 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 75, 10 |
| Conread position: | 158-379 |
| Cow position: | chr4:25586636-25586414 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 72, 18 |
| Conread position: | 158-379 |
| Cow position: | chr4:37488975-37489195 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 158-379 |
| Cow position: | chr4:41852857-41853089 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 184 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 75, 216 |
| Conread position: | 158-379 |
| Cow position: | chr4:45462426-45462189 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 158-379 |
| Cow position: | chr4:62609842-62609607 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 29, 43 |
| Conread position: | 158-379 |
| Cow position: | chr4:64698073-64697845 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 76, 18 |
| Conread position: | 158-379 |
| Cow position: | chr4:65042196-65041976 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 159-379 |
| Cow position: | chr4:68071834-68072061 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 74, 58 |
| Conread position: | 160-377 |
| Cow position: | chr4:55844534-55844766 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 27, 62 |
| Conread position: | 160-379 |
| Cow position: | chr4:46787884-46787665 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 27, 16 |
| Conread position: | 160-380 |
| Cow position: | chr4:66930197-66930427 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 166-376 |
| Cow position: | chr4:10489887-10489665 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 167-325 |
| Cow position: | chr4:57571843-57572004 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 66, 11 |
| Conread position: | 167-377 |
| Cow position: | chr4:63218272-63218487 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 66, 187 |
| Conread position: | 178-379 |
| Cow position: | chr4:64701428-64701640 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 56, 183 |
| Conread position: | 180-379 |
| Cow position: | chr4:50629708-50629497 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 8, 184 |
| Conread position: | 184-346 |
| Cow position: | chr4:11012115-11012282 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 49, 0 |
Show alignments to all cow chromosomes.