Cow genome map
| Conread name: | Ss1.1-rcki014_i4.5 |
| Conread position: | 1-309 |
| Cow position: | chr5:64183603-64183292 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 45 |
| Conread position: | 1-332 |
| Cow position: | chr5:32043333-32043659 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 120, 34 |
| Conread position: | 1-332 |
| Cow position: | chr5:44134738-44134386 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 218 |
| Conread position: | 1-332 |
| Cow position: | chr5:64370964-64370619 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 16 |
| Conread position: | 1-334 |
| Cow position: | chr5:20188969-20188623 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 34 |
| Conread position: | 1-342 |
| Cow position: | chr5:9501460-9501810 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 85, 271 |
| Conread position: | 1-346 |
| Cow position: | chr5:18381001-18380629 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 1-346 |
| Cow position: | chr5:42714371-42714028 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 37 |
| Conread position: | 1-347 |
| Cow position: | chr5:36670216-36669850 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 271 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 92, 38 |
| Conread position: | 1-379 |
| Cow position: | chr5:56623578-56623962 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 130 |
| Conread position: | 2-346 |
| Cow position: | chr5:69526719-69527082 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 33 |
| Conread position: | 3-277 |
| Cow position: | chr5:72590697-72590436 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 106 |
| Conread position: | 3-376 |
| Cow position: | chr5:48478791-48478409 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 173 |
| Conread position: | 8-247 |
| Cow position: | chr5:43463427-43463670 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 30 |
| Conread position: | 8-250 |
| Cow position: | chr5:2425057-2425308 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 44-209 |
| Cow position: | chr5:30412493-30412670 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 62, 52 |
| Conread position: | 45-209 |
| Cow position: | chr5:64105835-64105678 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 135, 45 |
| Conread position: | 45-254 |
| Cow position: | chr5:31569736-31569518 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 47-152 |
| Cow position: | chr5:44888008-44888116 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 81-234 |
| Cow position: | chr5:40699439-40699284 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 18, 133 |
| Conread position: | 111-326 |
| Cow position: | chr5:17848451-17848669 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 69, 100 |
| Conread position: | 126-379 |
| Cow position: | chr5:65147380-65147127 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 107, 50 |
| Conread position: | 127-336 |
| Cow position: | chr5:56634897-56634679 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 35, 215 |
| Conread position: | 128-341 |
| Cow position: | chr5:66307973-66307764 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 58, 88 |
| Conread position: | 143-379 |
| Cow position: | chr5:19683483-19683233 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 191 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 146-379 |
| Cow position: | chr5:20656979-20657220 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 87, 36 |
| Conread position: | 156-378 |
| Cow position: | chr5:10883138-10882908 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 77, 27 |
| Conread position: | 157-370 |
| Cow position: | chr5:47761645-47761429 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 24, 159 |
| Conread position: | 158-278 |
| Cow position: | chr5:44912164-44912042 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 158-309 |
| Cow position: | chr5:50994896-50994740 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 158-311 |
| Cow position: | chr5:64068289-64068443 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 29, 136 |
| Conread position: | 158-328 |
| Cow position: | chr5:43156474-43156649 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 158-374 |
| Cow position: | chr5:60124978-60125203 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 158-376 |
| Cow position: | chr5:15604471-15604713 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 158-377 |
| Cow position: | chr5:11443845-11443626 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 75, 84 |
| Conread position: | 158-377 |
| Cow position: | chr5:44490736-44490964 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 212 |
| Conread position: | 158-377 |
| Cow position: | chr5:58447906-58448140 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 158-378 |
| Cow position: | chr5:47491112-47490888 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 75, 24 |
| Conread position: | 158-379 |
| Cow position: | chr5:21460271-21460499 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 158-379 |
| Cow position: | chr5:32087510-32087724 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 25, 87 |
| Conread position: | 158-379 |
| Cow position: | chr5:45143528-45143759 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 75, 24 |
| Conread position: | 158-379 |
| Cow position: | chr5:48047351-48047123 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 158-379 |
| Cow position: | chr5:55295597-55295831 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 158-379 |
| Cow position: | chr5:60916722-60916489 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 184 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 16, 99 |
| Conread position: | 158-379 |
| Cow position: | chr5:69122195-69121965 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 23, 59 |
| Conread position: | 159-377 |
| Cow position: | chr5:36405824-36405597 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 22, 189 |
| Conread position: | 159-377 |
| Cow position: | chr5:46821470-46821687 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 160-370 |
| Cow position: | chr5:8771034-8771258 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 160-376 |
| Cow position: | chr5:59786738-59786509 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 27, 114 |
| Conread position: | 161-376 |
| Cow position: | chr5:47724499-47724271 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 7, 204 |
| Conread position: | 167-379 |
| Cow position: | chr5:14095014-14095231 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 63, 158 |
| Conread position: | 172-379 |
| Cow position: | chr5:14855916-14856133 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 176-376 |
| Cow position: | chr5:64123495-64123708 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 178-374 |
| Cow position: | chr5:60182988-60183197 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 178-379 |
| Cow position: | chr5:25483506-25483718 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 55, 185 |
| Conread position: | 178-379 |
| Cow position: | chr5:33910801-33911015 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 31, 187 |
| Conread position: | 178-379 |
| Cow position: | chr5:33983347-33983137 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 55, 185 |
| Conread position: | 179-377 |
| Cow position: | chr5:13198733-13198943 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 54, 185 |
| Conread position: | 179-379 |
| Cow position: | chr5:65144112-65143903 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 54, 85 |
| Conread position: | 179-380 |
| Cow position: | chr5:75409336-75409126 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 55, 169 |
| Conread position: | 180-379 |
| Cow position: | chr5:22185634-22185429 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 165 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 53, 145 |
| Conread position: | 184-379 |
| Cow position: | chr5:48250535-48250739 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 49, 177 |
| Conread position: | 184-379 |
| Cow position: | chr5:55170629-55170837 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 186-378 |
| Cow position: | chr5:30555566-30555364 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 6, 11 |
| Conread position: | 188-379 |
| Cow position: | chr5:34469762-34469563 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 45, 101 |
| Conread position: | 204-377 |
| Cow position: | chr5:46730494-46730327 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 41 |
| Conread position: | 235-376 |
| Cow position: | chr5:75540897-75541046 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
Show alignments to all cow chromosomes.