Cow genome map
| Conread name: | Ss1.1-rcki014_i4.5 |
| Conread position: | 1-281 |
| Cow position: | chr6:42988737-42989029 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 78, 34 |
| Conread position: | 1-291 |
| Cow position: | chr6:24303980-24304278 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 34 |
| Conread position: | 1-346 |
| Cow position: | chr6:27578347-27578689 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 186, 30 |
| Conread position: | 1-379 |
| Cow position: | chr6:25810383-25809997 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 35 |
| Conread position: | 3-346 |
| Cow position: | chr6:65186223-65185884 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 26 |
| Conread position: | 5-338 |
| Cow position: | chr6:1629615-1629966 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 29 |
| Conread position: | 8-346 |
| Cow position: | chr6:34023657-34023300 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 27 |
| Conread position: | 9-277 |
| Cow position: | chr6:19709460-19709729 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 21 |
| Conread position: | 42-264 |
| Cow position: | chr6:48376547-48376321 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 98, 173 |
| Conread position: | 44-209 |
| Cow position: | chr6:49166623-49166793 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 44-334 |
| Cow position: | chr6:48024292-48023990 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 31 |
| Conread position: | 44-375 |
| Cow position: | chr6:434831-435168 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 201 |
| Conread position: | 45-195 |
| Cow position: | chr6:45337132-45337285 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 46-209 |
| Cow position: | chr6:44109958-44109793 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 53, 78 |
| Conread position: | 46-226 |
| Cow position: | chr6:60174463-60174648 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 53, 170 |
| Conread position: | 46-376 |
| Cow position: | chr6:59988605-59988282 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 19 |
| Conread position: | 47-209 |
| Cow position: | chr6:26938322-26938157 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 53, 114 |
| Conread position: | 47-210 |
| Cow position: | chr6:19012578-19012405 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 74 |
| Conread position: | 100-345 |
| Cow position: | chr6:6380093-6379834 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 17, 111 |
| Conread position: | 103-328 |
| Cow position: | chr6:57965093-57965313 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 177 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 77, 7 |
| Conread position: | 104-325 |
| Cow position: | chr6:64706056-64706285 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 37, 112 |
| Conread position: | 104-347 |
| Cow position: | chr6:54431197-54431445 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 129, 59 |
| Conread position: | 111-347 |
| Cow position: | chr6:39706323-39706563 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 118, 96 |
| Conread position: | 120-347 |
| Cow position: | chr6:58916774-58916546 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 78, 7 |
| Conread position: | 135-376 |
| Cow position: | chr6:54879749-54879493 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 193 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 144-379 |
| Cow position: | chr6:30021525-30021284 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 89, 36 |
| Conread position: | 146-307 |
| Cow position: | chr6:6786771-6786611 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 88, 36 |
| Conread position: | 146-319 |
| Cow position: | chr6:47169873-47169695 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 158-277 |
| Cow position: | chr6:42098902-42099020 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 158-358 |
| Cow position: | chr6:25627743-25627532 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 169 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 158-374 |
| Cow position: | chr6:26125099-26125322 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 75, 82 |
| Conread position: | 158-375 |
| Cow position: | chr6:56674589-56674358 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 158-377 |
| Cow position: | chr6:19710980-19710754 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 158-377 |
| Cow position: | chr6:49414267-49414506 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 158-378 |
| Cow position: | chr6:27636233-27636000 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 70, 207 |
| Conread position: | 158-379 |
| Cow position: | chr6:39743916-39743711 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 158-379 |
| Cow position: | chr6:54084477-54084256 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 158-379 |
| Cow position: | chr6:68020170-68020392 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 71 |
| Conread position: | 159-288 |
| Cow position: | chr6:67424635-67424509 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 46 |
| Conread position: | 159-379 |
| Cow position: | chr6:61211829-61211599 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 160-376 |
| Cow position: | chr6:53148156-53148369 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 22, 103 |
| Conread position: | 160-376 |
| Cow position: | chr6:61431647-61431874 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 160-377 |
| Cow position: | chr6:60373613-60373834 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 20, 49 |
| Conread position: | 160-379 |
| Cow position: | chr6:32521454-32521670 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 73, 10 |
| Conread position: | 165-378 |
| Cow position: | chr6:55461887-55461658 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 175-346 |
| Cow position: | chr6:6812375-6812558 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 58, 34 |
| Conread position: | 178-379 |
| Cow position: | chr6:49099492-49099282 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 51, 183 |
| Conread position: | 203-379 |
| Cow position: | chr6:35714114-35714288 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 30, 84 |
| Conread position: | 222-375 |
| Cow position: | chr6:50825333-50825171 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 232-377 |
| Cow position: | chr6:1156246-1156093 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
Show alignments to all cow chromosomes.