Cow genome map
| Conread name: | Ss1.1-rcki014_i4.5 |
| Conread position: | 1-185 |
| Cow position: | chr7:40708663-40708491 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 1-245 |
| Cow position: | chr7:11431102-11431338 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 75 |
| Conread position: | 1-321 |
| Cow position: | chr7:38094643-38094974 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 255 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 19, 28 |
| Conread position: | 1-328 |
| Cow position: | chr7:16491621-16491961 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 20 |
| Conread position: | 1-341 |
| Cow position: | chr7:2270144-2270496 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 37 |
| Conread position: | 1-341 |
| Cow position: | chr7:49211836-49211503 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 37 |
| Conread position: | 1-346 |
| Cow position: | chr7:14869180-14869539 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 269 |
| Conread position: | 1-346 |
| Cow position: | chr7:28895041-28894688 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 34 |
| Conread position: | 1-346 |
| Cow position: | chr7:55697049-55697395 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 64 |
| Conread position: | 23-345 |
| Cow position: | chr7:25851759-25852093 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 23-376 |
| Cow position: | chr7:16701830-16702197 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 12 |
| Conread position: | 43-346 |
| Cow position: | chr7:23456133-23456452 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 89 |
| Conread position: | 44-209 |
| Cow position: | chr7:21994670-21994493 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 65, 82 |
| Conread position: | 44-226 |
| Cow position: | chr7:45939689-45939876 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 65, 172 |
| Conread position: | 45-209 |
| Cow position: | chr7:5026553-5026380 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 45-379 |
| Cow position: | chr7:32826441-32826790 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 125 |
| Conread position: | 46-209 |
| Cow position: | chr7:43899805-43899638 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 46-211 |
| Cow position: | chr7:2127309-2127488 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 46-218 |
| Cow position: | chr7:47884633-47884462 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 127, 72 |
| Conread position: | 46-267 |
| Cow position: | chr7:28005136-28005357 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 63, 106 |
| Conread position: | 47-209 |
| Cow position: | chr7:32919084-32919258 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 76 |
| Conread position: | 47-227 |
| Cow position: | chr7:10279082-10279261 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 62, 110 |
| Conread position: | 52-207 |
| Cow position: | chr7:52896989-52896840 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 121, 55 |
| Conread position: | 53-346 |
| Cow position: | chr7:6320791-6320502 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 50, 79 |
| Conread position: | 64-277 |
| Cow position: | chr7:17219943-17220161 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 75-346 |
| Cow position: | chr7:1822755-1822467 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 80-347 |
| Cow position: | chr7:57006184-57005915 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 29, 62 |
| Conread position: | 103-334 |
| Cow position: | chr7:8734838-8734599 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 63, 108 |
| Conread position: | 146-358 |
| Cow position: | chr7:14420988-14420764 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 37, 63 |
| Conread position: | 146-373 |
| Cow position: | chr7:76182-76416 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 37, 72 |
| Conread position: | 147-379 |
| Cow position: | chr7:8041168-8040927 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 191 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 40, 213 |
| Conread position: | 158-359 |
| Cow position: | chr7:37206918-37207119 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 29, 98 |
| Conread position: | 158-376 |
| Cow position: | chr7:14214622-14214851 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 158-377 |
| Cow position: | chr7:8983246-8983013 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 158-377 |
| Cow position: | chr7:28006549-28006324 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 158-377 |
| Cow position: | chr7:44009979-44010200 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 75, 21 |
| Conread position: | 158-379 |
| Cow position: | chr7:4544224-4543986 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 158-379 |
| Cow position: | chr7:5217099-5217330 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 158-379 |
| Cow position: | chr7:12423702-12423476 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 75, 21 |
| Conread position: | 158-384 |
| Cow position: | chr7:33933242-33933002 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 75, 12 |
| Conread position: | 159-347 |
| Cow position: | chr7:10035317-10035121 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 24, 108 |
| Conread position: | 159-379 |
| Cow position: | chr7:14532322-14532537 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 160-328 |
| Cow position: | chr7:13808800-13808973 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 160-346 |
| Cow position: | chr7:907735-907536 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 32, 16 |
| Conread position: | 160-379 |
| Cow position: | chr7:40457907-40457674 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 160-381 |
| Cow position: | chr7:61777021-61776797 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 27, 222 |
| Conread position: | 178-332 |
| Cow position: | chr7:21926633-21926481 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 56, 118 |
| Conread position: | 178-378 |
| Cow position: | chr7:7245497-7245707 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 55, 81 |
| Conread position: | 178-379 |
| Cow position: | chr7:11953163-11952962 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 56, 97 |
| Conread position: | 184-346 |
| Cow position: | chr7:39174239-39174079 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 49, 16 |
| Conread position: | 237-346 |
| Cow position: | chr7:2977045-2977155 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
Show alignments to all cow chromosomes.