Cow genome map
| Conread name: | Ss1.1-rcki014_i4.5 |
| Conread position: | 1-344 |
| Cow position: | chr9:39045413-39045066 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 68, 22 |
| Conread position: | 1-346 |
| Cow position: | chr9:7056664-7057033 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 12, 20 |
| Conread position: | 1-346 |
| Cow position: | chr9:48070459-48070098 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 42 |
| Conread position: | 1-346 |
| Cow position: | chr9:53332526-53332888 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 34 |
| Conread position: | 1-347 |
| Cow position: | chr9:30111036-30111401 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 57 |
| Conread position: | 1-374 |
| Cow position: | chr9:61312531-61312909 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 15 |
| Conread position: | 2-345 |
| Cow position: | chr9:11425078-11425427 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 105, 29 |
| Conread position: | 2-346 |
| Cow position: | chr9:21103092-21103458 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 34 |
| Conread position: | 3-193 |
| Cow position: | chr9:61140010-61139819 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 96, 58 |
| Conread position: | 8-346 |
| Cow position: | chr9:61445975-61445623 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 27 |
| Conread position: | 8-355 |
| Cow position: | chr9:10889297-10888926 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 50 |
| Conread position: | 34-209 |
| Cow position: | chr9:46090844-46090659 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 89 |
| Conread position: | 40-227 |
| Cow position: | chr9:51277743-51277551 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 45, 176 |
| Conread position: | 44-157 |
| Cow position: | chr9:49457926-49458041 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 44-209 |
| Cow position: | chr9:23950756-23950582 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 77 |
| Conread position: | 44-209 |
| Cow position: | chr9:25574374-25574535 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 129, 65 |
| Conread position: | 44-209 |
| Cow position: | chr9:51279660-51279828 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 44-210 |
| Cow position: | chr9:36425895-36426065 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 44-333 |
| Cow position: | chr9:6589877-6590155 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 263, 35 |
| Conread position: | 44-356 |
| Cow position: | chr9:1020622-1020946 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 309 |
| Conread position: | 47-209 |
| Cow position: | chr9:21499917-21499756 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 74 |
| Conread position: | 47-209 |
| Cow position: | chr9:26525530-26525702 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 47-209 |
| Cow position: | chr9:56082861-56082693 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 47-341 |
| Cow position: | chr9:21900118-21900406 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 134 |
| Conread position: | 87-346 |
| Cow position: | chr9:31545115-31544847 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 208 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 11, 124 |
| Conread position: | 104-347 |
| Cow position: | chr9:6269330-6269583 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 129, 103 |
| Conread position: | 111-346 |
| Cow position: | chr9:43834124-43833877 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 72, 100 |
| Conread position: | 143-375 |
| Cow position: | chr9:27372887-27372642 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 144-379 |
| Cow position: | chr9:4700962-4701193 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 14, 104 |
| Conread position: | 146-368 |
| Cow position: | chr9:26700528-26700757 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 146-375 |
| Cow position: | chr9:35183489-35183248 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 187 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 35, 198 |
| Conread position: | 146-379 |
| Cow position: | chr9:21424712-21424464 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 41, 203 |
| Conread position: | 146-379 |
| Cow position: | chr9:21653047-21652807 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 84, 30 |
| Conread position: | 146-379 |
| Cow position: | chr9:44323380-44323618 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 87, 30 |
| Conread position: | 158-310 |
| Cow position: | chr9:41902650-41902489 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 158-370 |
| Cow position: | chr9:10969511-10969726 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 75, 36 |
| Conread position: | 158-376 |
| Cow position: | chr9:26734940-26734727 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 72, 99 |
| Conread position: | 158-376 |
| Cow position: | chr9:35191725-35191493 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 181 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 158-376 |
| Cow position: | chr9:35837043-35837272 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 158-376 |
| Cow position: | chr9:48518562-48518789 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 158-376 |
| Cow position: | chr9:52009728-52009953 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 75, 10 |
| Conread position: | 158-377 |
| Cow position: | chr9:44327457-44327679 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 158-379 |
| Cow position: | chr9:38864182-38864412 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 77, 25 |
| Conread position: | 158-379 |
| Cow position: | chr9:45229317-45229542 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 75, 10 |
| Conread position: | 158-379 |
| Cow position: | chr9:50684149-50683913 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 185 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 158-379 |
| Cow position: | chr9:58399456-58399229 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 75, 24 |
| Conread position: | 158-382 |
| Cow position: | chr9:50464827-50464600 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 75, 24 |
| Conread position: | 159-378 |
| Cow position: | chr9:28850468-28850692 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 24, 14 |
| Conread position: | 178-377 |
| Cow position: | chr9:5064369-5064582 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 182-380 |
| Cow position: | chr9:4961576-4961363 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 51, 184 |
| Conread position: | 184-379 |
| Cow position: | chr9:45947125-45947319 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 155 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 49, 132 |
| Conread position: | 188-346 |
| Cow position: | chr9:11359332-11359163 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 45, 21 |
| Conread position: | 196-378 |
| Cow position: | chr9:6856697-6856497 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 37, 61 |
| Conread position: | 196-379 |
| Cow position: | chr9:61292170-61292356 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 37, 63 |
| Conread position: | 225-379 |
| Cow position: | chr9:27303895-27303737 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 131 |
| Conread position: | 232-375 |
| Cow position: | chr9:32642782-32642627 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
Show alignments to all cow chromosomes.