Cow genome map
| Conread name: | Ss1.1-rcki016_h19.5 |
| Conread position: | 341-840 |
| Cow position: | chr17:22473421-22473921 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 315 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 7, 158 |
| Conread position: | 351-828 |
| Cow position: | chr17:22473264-22473741 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 137 |
| Conread position: | 384-796 |
| Cow position: | chr17:22499093-22498684 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 257 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 384-797 |
| Cow position: | chr17:22552718-22552308 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 253 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 364, 98 |
| Conread position: | 388-714 |
| Cow position: | chr17:22452159-22451836 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 390-702 |
| Cow position: | chr17:22473642-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 41, 32 |
| Conread position: | 390-769 |
| Cow position: | chr17:22551872-22551496 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 96, 104 |
| Conread position: | 390-784 |
| Cow position: | chr17:22499339-22498948 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 96, 105 |
| Conread position: | 390-796 |
| Cow position: | chr17:22590046-22589643 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 95, 106 |
| Conread position: | 390-796 |
| Cow position: | chr17:22590214-22589811 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 96, 106 |
| Conread position: | 390-797 |
| Cow position: | chr17:22452409-22452005 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 13, 24 |
| Conread position: | 390-840 |
| Cow position: | chr17:22499171-22498724 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 273 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 71, 75 |
| Conread position: | 391-798 |
| Cow position: | chr17:22552963-22552559 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 351, 89 |
| Conread position: | 403-797 |
| Cow position: | chr17:22552195-22551804 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 339, 77 |
| Conread position: | 403-799 |
| Cow position: | chr17:22551943-22551550 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 83, 91 |
| Conread position: | 415-828 |
| Cow position: | chr17:22498978-22498568 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 257 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 71, 81 |
| Conread position: | 416-796 |
| Cow position: | chr17:22590272-22589895 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 70, 43 |
| Conread position: | 418-797 |
| Cow position: | chr17:22552852-22552476 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 418-799 |
| Cow position: | chr17:22552768-22552390 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 68, 78 |
| Conread position: | 418-800 |
| Cow position: | chr17:22552096-22551717 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 324, 64 |
| Conread position: | 422-797 |
| Cow position: | chr17:22552596-22552224 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 136, 63 |
| Conread position: | 423-840 |
| Cow position: | chr17:22473423-22473837 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 58 |
| Conread position: | 496-797 |
| Cow position: | chr17:22452222-22451921 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 246, 255 |
| Conread position: | 496-799 |
| Cow position: | chr17:22552273-22551970 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 5, 9 |
| Conread position: | 500-840 |
| Cow position: | chr17:22473328-22473669 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 231 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 6, 244 |
| Conread position: | 503-792 |
| Cow position: | chr17:22498809-22498521 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 239, 244 |
| Conread position: | 503-835 |
| Cow position: | chr17:22499145-22498813 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 239, 248 |
| Conread position: | 512-837 |
| Cow position: | chr17:22499388-22499063 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 220, 231 |
| Conread position: | 514-840 |
| Cow position: | chr17:22473181-22473501 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 65, 22 |
| Conread position: | 586-829 |
| Cow position: | chr17:22499398-22499153 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 156, 160 |
Show alignments to all cow chromosomes.