Cow genome map


           Conread name:
           Ss1.1-rcki016_h19.5
        

               Conread position:
               128-255
               

               Cow position:
               
               

               Alignm length:
               128
               

               Alignm identity:
               99
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               128-256
               

               Cow position:
               
               

               Alignm length:
               129
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               128-266
               

               Cow position:
               
               

               Alignm length:
               139
               

               Alignm identity:
               106
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               315-840
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 104
               

               Conread position:
               341-797
               

               Cow position:
               
               

               Alignm length:
               463
               

               Alignm identity:
               298
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               17, 144
               

               Conread position:
               356-797
               

               Cow position:
               
               

               Alignm length:
               446
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 132
               

               Conread position:
               374-784
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               272
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               87, 104
               

               Conread position:
               374-797
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               275
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               112, 122
               

               Conread position:
               375-715
               

               Cow position:
               
               

               Alignm length:
               342
               

               Alignm identity:
               214
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               186, 96
               

               Conread position:
               378-715
               

               Cow position:
               
               

               Alignm length:
               341
               

               Alignm identity:
               219
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               83, 92
               

               Conread position:
               380-784
               

               Cow position:
               
               

               Alignm length:
               408
               

               Alignm identity:
               249
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               179, 105
               

               Conread position:
               383-764
               

               Cow position:
               
               

               Alignm length:
               387
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               48, 34
               

               Conread position:
               384-784
               

               Cow position:
               
               

               Alignm length:
               404
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               102, 112
               

               Conread position:
               384-840
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               263, 114
               

               Conread position:
               387-797
               

               Cow position:
               
               

               Alignm length:
               412
               

               Alignm identity:
               252
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               355, 94
               

               Conread position:
               387-840
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               284
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               97, 92
               

               Conread position:
               388-765
               

               Cow position:
               
               

               Alignm length:
               382
               

               Alignm identity:
               241
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               186, 31
               

               Conread position:
               388-824
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               282
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               19, 26
               

               Conread position:
               388-840
               

               Cow position:
               
               

               Alignm length:
               455
               

               Alignm identity:
               280
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               185, 101
               

               Conread position:
               389-784
               

               Cow position:
               
               

               Alignm length:
               399
               

               Alignm identity:
               253
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               42, 29
               

               Conread position:
               390-791
               

               Cow position:
               
               

               Alignm length:
               403
               

               Alignm identity:
               253
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               18, 26
               

               Conread position:
               390-796
               

               Cow position:
               
               

               Alignm length:
               408
               

               Alignm identity:
               249
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               91, 106
               

               Conread position:
               390-797
               

               Cow position:
               
               

               Alignm length:
               412
               

               Alignm identity:
               254
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               183, 92
               

               Conread position:
               390-800
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               262
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               183, 92
               

               Conread position:
               390-816
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               254
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               167, 98
               

               Conread position:
               390-837
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               275
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               96, 106
               

               Conread position:
               390-840
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               292
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               265, 109
               

               Conread position:
               391-796
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               257
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               258, 89
               

               Conread position:
               395-796
               

               Cow position:
               
               

               Alignm length:
               404
               

               Alignm identity:
               249
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               71, 101
               

               Conread position:
               398-768
               

               Cow position:
               
               

               Alignm length:
               373
               

               Alignm identity:
               226
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               63, 79
               

               Conread position:
               398-786
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               398-830
               

               Cow position:
               
               

               Alignm length:
               434
               

               Alignm identity:
               275
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               88, 81
               

               Conread position:
               398-837
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               403-816
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               250
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               92, 71
               

               Conread position:
               403-840
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               279
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               170, 85
               

               Conread position:
               415-686
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               415-724
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               191
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               415-791
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               66, 79
               

               Conread position:
               415-828
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 56
               

               Conread position:
               416-796
               

               Cow position:
               
               

               Alignm length:
               383
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               321, 58
               

               Conread position:
               418-796
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               247
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               302, 61
               

               Conread position:
               418-839
               

               Cow position:
               
               

               Alignm length:
               424
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               319, 75
               

               Conread position:
               420-823
               

               Cow position:
               
               

               Alignm length:
               404
               

               Alignm identity:
               254
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               422-828
               

               Cow position:
               
               

               Alignm length:
               408
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 43
               

               Conread position:
               423-797
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               238
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               38, 52
               

               Conread position:
               423-797
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               254
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               63, 51
               

               Conread position:
               423-824
               

               Cow position:
               
               

               Alignm length:
               403
               

               Alignm identity:
               256
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               153, 62
               

               Conread position:
               428-797
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               240
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               58, 67
               

               Conread position:
               432-838
               

               Cow position:
               
               

               Alignm length:
               412
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 63
               

               Conread position:
               494-824
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               249, 257
               

               Conread position:
               497-775
               

               Cow position:
               
               

               Alignm length:
               283
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               61, 77
               

               Conread position:
               502-797
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               201
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               218, 214
               

               Conread position:
               503-796
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               208
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               57, 71
               

               Conread position:
               503-797
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               188
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               239, 244
               

               Conread position:
               503-837
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               216, 99
               

               Conread position:
               503-840
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               228
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               217, 212
               

               Conread position:
               503-840
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               213
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               238, 244
               

               Conread position:
               504-796
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               229, 243
               

               Conread position:
               504-797
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               228, 235
               

               Conread position:
               504-797
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               51, 35
               

               Conread position:
               504-840
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               228, 52
               

               Conread position:
               508-796
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               186
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               234, 239
               

               Conread position:
               520-828
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               42, 50
               

               Conread position:
               554-840
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               19, 29
               
Show alignments to all cow chromosomes.