Cow genome map
| Conread name: | Ss1.1-rcki016_h19.5 |
| Conread position: | 128-255 |
| Cow position: | chr19:20625462-20625335 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-256 |
| Cow position: | chr19:20667688-20667816 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-266 |
| Cow position: | chr19:20638201-20638064 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 315-840 |
| Cow position: | chr19:20677261-20677783 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 104 |
| Conread position: | 341-797 |
| Cow position: | chr19:23613856-23614313 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 298 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 17, 144 |
| Conread position: | 356-797 |
| Cow position: | chr19:20635529-20635088 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 132 |
| Conread position: | 374-784 |
| Cow position: | chr19:23613977-23614384 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 272 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 87, 104 |
| Conread position: | 374-797 |
| Cow position: | chr19:23613473-23613893 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 275 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 112, 122 |
| Conread position: | 375-715 |
| Cow position: | chr19:14940702-14941039 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 186, 96 |
| Conread position: | 378-715 |
| Cow position: | chr19:14960096-14959764 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 83, 92 |
| Conread position: | 380-784 |
| Cow position: | chr19:14940539-14940940 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 179, 105 |
| Conread position: | 383-764 |
| Cow position: | chr19:14960257-14959881 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 48, 34 |
| Conread position: | 384-784 |
| Cow position: | chr19:14960340-14959945 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 102, 112 |
| Conread position: | 384-840 |
| Cow position: | chr19:20678338-20678788 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 114 |
| Conread position: | 387-797 |
| Cow position: | chr19:23614410-23614817 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 355, 94 |
| Conread position: | 387-840 |
| Cow position: | chr19:23614074-23614524 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 284 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 97, 92 |
| Conread position: | 388-765 |
| Cow position: | chr19:14959680-14959308 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 186, 31 |
| Conread position: | 388-824 |
| Cow position: | chr19:23613823-23614256 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 282 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 19, 26 |
| Conread position: | 388-840 |
| Cow position: | chr19:14940043-14940492 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 280 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 185, 101 |
| Conread position: | 389-784 |
| Cow position: | chr19:23614244-23614636 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 42, 29 |
| Conread position: | 390-791 |
| Cow position: | chr19:23614497-23614895 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 253 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 390-796 |
| Cow position: | chr19:14940297-14940700 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 91, 106 |
| Conread position: | 390-797 |
| Cow position: | chr19:23614581-23614985 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 254 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 183, 92 |
| Conread position: | 390-800 |
| Cow position: | chr19:23614161-23614568 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 183, 92 |
| Conread position: | 390-816 |
| Cow position: | chr19:23649863-23650286 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 167, 98 |
| Conread position: | 390-837 |
| Cow position: | chr19:23597254-23597698 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 275 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 96, 106 |
| Conread position: | 390-840 |
| Cow position: | chr19:20677840-20678287 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 292 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 265, 109 |
| Conread position: | 391-796 |
| Cow position: | chr19:23614750-23615148 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 258, 89 |
| Conread position: | 395-796 |
| Cow position: | chr19:23614334-23614732 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 71, 101 |
| Conread position: | 398-768 |
| Cow position: | chr19:23597346-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 63, 79 |
| Conread position: | 398-786 |
| Cow position: | chr19:20635400-20635015 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 398-830 |
| Cow position: | chr19:23613413-23613842 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 275 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 88, 81 |
| Conread position: | 398-837 |
| Cow position: | chr19:20678270-20678704 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 403-816 |
| Cow position: | chr19:43570238-43569828 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 92, 71 |
| Conread position: | 403-840 |
| Cow position: | chr19:23613670-23614104 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 279 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 170, 85 |
| Conread position: | 415-686 |
| Cow position: | chr19:20678537-20678802 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 415-724 |
| Cow position: | chr19:20635299-20634993 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 415-791 |
| Cow position: | chr19:23649972-23650345 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 79 |
| Conread position: | 415-828 |
| Cow position: | chr19:20635551-20635141 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 56 |
| Conread position: | 416-796 |
| Cow position: | chr19:20678118-20678495 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 58 |
| Conread position: | 418-796 |
| Cow position: | chr19:23613769-23614144 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 247 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 302, 61 |
| Conread position: | 418-839 |
| Cow position: | chr19:20677700-20678118 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 75 |
| Conread position: | 420-823 |
| Cow position: | chr19:23597200-23597600 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 254 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 422-828 |
| Cow position: | chr19:20678040-20678443 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 43 |
| Conread position: | 423-797 |
| Cow position: | chr19:14960385-14960016 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 238 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 38, 52 |
| Conread position: | 423-797 |
| Cow position: | chr19:20677957-20678328 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 254 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 63, 51 |
| Conread position: | 423-824 |
| Cow position: | chr19:20677453-20677851 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 153, 62 |
| Conread position: | 428-797 |
| Cow position: | chr19:23597040-23597406 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 432-838 |
| Cow position: | chr19:20677630-20678035 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 63 |
| Conread position: | 494-824 |
| Cow position: | chr19:20635643-20635313 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 257 |
| Conread position: | 497-775 |
| Cow position: | chr19:23650135-23650413 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 61, 77 |
| Conread position: | 502-797 |
| Cow position: | chr19:14960393-14960100 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 218, 214 |
| Conread position: | 503-796 |
| Cow position: | chr19:14940071-14940364 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 57, 71 |
| Conread position: | 503-797 |
| Cow position: | chr19:14940743-14941037 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 239, 244 |
| Conread position: | 503-837 |
| Cow position: | chr19:43570383-43570059 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 216, 99 |
| Conread position: | 503-840 |
| Cow position: | chr19:20677866-20678203 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 217, 212 |
| Conread position: | 503-840 |
| Cow position: | chr19:43570225-43569888 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 238, 244 |
| Conread position: | 504-796 |
| Cow position: | chr19:14940576-14940868 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 229, 243 |
| Conread position: | 504-797 |
| Cow position: | chr19:14939988-14940281 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 228, 235 |
| Conread position: | 504-797 |
| Cow position: | chr19:23649806-23650099 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 51, 35 |
| Conread position: | 504-840 |
| Cow position: | chr19:14959158-14958828 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 228, 52 |
| Conread position: | 508-796 |
| Cow position: | chr19:23613352-23613640 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 234, 239 |
| Conread position: | 520-828 |
| Cow position: | chr19:20635701-20635393 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 42, 50 |
| Conread position: | 554-840 |
| Cow position: | chr19:23649436-23649722 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 29 |
Show alignments to all cow chromosomes.