Cow genome map
| Conread name: | Ss1.1-rcki016_h19.5 |
| Conread position: | 128-259 |
| Cow position: | chr22:14439809-14439940 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-259 |
| Cow position: | chr22:14465235-14465366 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-265 |
| Cow position: | chr22:14426737-14426873 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 264-797 |
| Cow position: | chr22:12419101-12418568 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 288 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 112, 220 |
| Conread position: | 315-828 |
| Cow position: | chr22:14429464-14429968 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 40 |
| Conread position: | 351-836 |
| Cow position: | chr22:14430163-14430650 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 303 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 31, 137 |
| Conread position: | 379-840 |
| Cow position: | chr22:12476345-12475887 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 350, 92 |
| Conread position: | 379-840 |
| Cow position: | chr22:12498914-12499372 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 277 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 350, 92 |
| Conread position: | 380-796 |
| Cow position: | chr22:12499503-12499916 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 263 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 124, 76 |
| Conread position: | 384-715 |
| Cow position: | chr22:12499087-12499415 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 176, 97 |
| Conread position: | 384-797 |
| Cow position: | chr22:12431775-12431365 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 177, 97 |
| Conread position: | 384-797 |
| Cow position: | chr22:12476172-12475762 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 195, 97 |
| Conread position: | 385-797 |
| Cow position: | chr22:12418893-12418484 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 356, 87 |
| Conread position: | 387-816 |
| Cow position: | chr22:12475917-12475491 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 269 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 74, 81 |
| Conread position: | 389-715 |
| Cow position: | chr22:12499596-12499919 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 72, 81 |
| Conread position: | 389-768 |
| Cow position: | chr22:12475663-12475287 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 97, 106 |
| Conread position: | 389-823 |
| Cow position: | chr22:12399706-12399275 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 91, 105 |
| Conread position: | 390-681 |
| Cow position: | chr22:12499681-12499969 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 390-791 |
| Cow position: | chr22:12432021-12431623 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 122, 88 |
| Conread position: | 390-797 |
| Cow position: | chr22:12385359-12384955 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 352, 95 |
| Conread position: | 390-797 |
| Cow position: | chr22:12475746-12475342 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 263 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 114, 66 |
| Conread position: | 391-764 |
| Cow position: | chr22:12458132-12457762 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 164, 90 |
| Conread position: | 398-840 |
| Cow position: | chr22:12399193-12398754 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 277 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 88, 101 |
| Conread position: | 403-824 |
| Cow position: | chr22:12399356-12398938 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 340, 85 |
| Conread position: | 404-778 |
| Cow position: | chr22:14430555-14430926 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 63, 68 |
| Conread position: | 412-840 |
| Cow position: | chr22:14429810-14430232 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 415-840 |
| Cow position: | chr22:14429978-14430400 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 84 |
| Conread position: | 415-840 |
| Cow position: | chr22:14468055-14468477 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 281 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 46, 55 |
| Conread position: | 418-828 |
| Cow position: | chr22:14430149-14430556 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 323, 48 |
| Conread position: | 418-828 |
| Cow position: | chr22:14430317-14430724 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 68, 56 |
| Conread position: | 418-830 |
| Cow position: | chr22:14468226-14468635 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 71, 77 |
| Conread position: | 418-835 |
| Cow position: | chr22:46654180-46654594 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 43, 57 |
| Conread position: | 418-840 |
| Cow position: | chr22:46654348-46654767 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 43, 57 |
| Conread position: | 422-840 |
| Cow position: | chr22:12385411-12384996 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 38, 42 |
| Conread position: | 423-828 |
| Cow position: | chr22:14429650-14430052 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 269 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 134, 49 |
| Conread position: | 427-802 |
| Cow position: | chr22:11640698-11641070 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 34 |
| Conread position: | 430-823 |
| Cow position: | chr22:14430077-14430467 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 303, 68 |
| Conread position: | 446-796 |
| Cow position: | chr22:46654292-46654639 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 446-797 |
| Cow position: | chr22:46654124-46654472 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 492-837 |
| Cow position: | chr22:46653998-46654344 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 12, 74 |
| Conread position: | 494-797 |
| Cow position: | chr22:12499110-12499413 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 153, 139 |
| Conread position: | 496-797 |
| Cow position: | chr22:12431499-12431197 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 8, 88 |
| Conread position: | 496-840 |
| Cow position: | chr22:14442034-14442378 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 223, 230 |
| Conread position: | 496-840 |
| Cow position: | chr22:14468049-14468393 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 236, 248 |
| Conread position: | 497-767 |
| Cow position: | chr22:11641184-11641455 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 7, 87 |
| Conread position: | 497-791 |
| Cow position: | chr22:12431246-12430951 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 7, 86 |
| Conread position: | 497-797 |
| Cow position: | chr22:11641100-11641401 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 7, 78 |
| Conread position: | 497-800 |
| Cow position: | chr22:12432422-12432118 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 7, 70 |
| Conread position: | 497-801 |
| Cow position: | chr22:12458366-12458060 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 7, 243 |
| Conread position: | 497-825 |
| Cow position: | chr22:14441951-14442279 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 63, 78 |
| Conread position: | 497-837 |
| Cow position: | chr22:14467966-14468306 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 60, 74 |
| Conread position: | 503-791 |
| Cow position: | chr22:12430987-12430699 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 50, 71 |
| Conread position: | 503-796 |
| Cow position: | chr22:12458611-12458318 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 54, 47 |
| Conread position: | 503-797 |
| Cow position: | chr22:11641023-11641317 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 70, 80 |
| Conread position: | 503-799 |
| Cow position: | chr22:14468392-14468687 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 148, 133 |
| Conread position: | 503-800 |
| Cow position: | chr22:12431995-12431698 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 71, 47 |
| Conread position: | 503-840 |
| Cow position: | chr22:12399763-12399426 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 239, 247 |
| Conread position: | 503-840 |
| Cow position: | chr22:14468224-14468561 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 61, 67 |
| Conread position: | 504-715 |
| Cow position: | chr22:12385164-12384953 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 504-796 |
| Cow position: | chr22:12458526-12458234 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 238, 243 |
| Conread position: | 504-797 |
| Cow position: | chr22:11640856-11641149 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 238, 247 |
| Conread position: | 504-797 |
| Cow position: | chr22:12498868-12499161 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 209, 238 |
| Conread position: | 504-840 |
| Cow position: | chr22:12385416-12385080 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 54, 43 |
| Conread position: | 508-796 |
| Cow position: | chr22:12431150-12430862 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 234, 243 |
| Conread position: | 508-797 |
| Cow position: | chr22:12458186-12457897 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 225, 231 |
| Conread position: | 508-801 |
| Cow position: | chr22:12431318-12431025 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 141, 125 |
| Conread position: | 509-797 |
| Cow position: | chr22:12399841-12399553 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 224, 234 |
| Conread position: | 510-840 |
| Cow position: | chr22:14430490-14430820 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 137, 121 |
| Conread position: | 514-808 |
| Cow position: | chr22:12431396-12431102 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 215, 202 |
| Conread position: | 522-803 |
| Cow position: | chr22:12431808-12431527 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 74, 47 |
| Conread position: | 522-838 |
| Cow position: | chr22:14441892-14442208 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 210, 222 |
| Conread position: | 554-829 |
| Cow position: | chr22:14467940-14468216 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 170, 15 |
| Conread position: | 582-824 |
| Cow position: | chr22:12432420-12432178 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 160, 169 |
Show alignments to all cow chromosomes.