Cow genome map
| Conread name: | Ss1.1-rcki016_h19.5 |
| Conread position: | 128-250 |
| Cow position: | chr7:11488092-11488214 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 64, 68 |
| Conread position: | 128-254 |
| Cow position: | chr7:8323771-8323897 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 133-256 |
| Cow position: | chr7:11438780-11438657 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 135-263 |
| Cow position: | chr7:18387060-18387187 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 142-259 |
| Cow position: | chr7:8240413-8240530 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 342-796 |
| Cow position: | chr7:11601185-11600730 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 10, 147 |
| Conread position: | 351-746 |
| Cow position: | chr7:11600839-11600443 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 252 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 25, 136 |
| Conread position: | 356-816 |
| Cow position: | chr7:11601086-11600626 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 297 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 20, 126 |
| Conread position: | 356-840 |
| Cow position: | chr7:8242816-8243300 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 303 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 26, 63 |
| Conread position: | 357-795 |
| Cow position: | chr7:8278202-8278632 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 34, 112 |
| Conread position: | 374-770 |
| Cow position: | chr7:18390368-18390761 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 367, 114 |
| Conread position: | 383-840 |
| Cow position: | chr7:11600972-11600518 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 106, 113 |
| Conread position: | 384-800 |
| Cow position: | chr7:42878808-42878395 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 358, 104 |
| Conread position: | 388-712 |
| Cow position: | chr7:1439943-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 113, 24 |
| Conread position: | 389-768 |
| Cow position: | chr7:1015076-1015452 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 97, 107 |
| Conread position: | 389-796 |
| Cow position: | chr7:1014824-1015228 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 353, 96 |
| Conread position: | 389-835 |
| Cow position: | chr7:3180086-3180529 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 290 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 72, 81 |
| Conread position: | 389-840 |
| Cow position: | chr7:3179918-3180366 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 99 |
| Conread position: | 389-840 |
| Cow position: | chr7:3180338-3180786 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 107 |
| Conread position: | 390-714 |
| Cow position: | chr7:42878634-42878313 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 96, 105 |
| Conread position: | 390-769 |
| Cow position: | chr7:42879138-42878762 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 390-798 |
| Cow position: | chr7:42878970-42878565 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 96, 102 |
| Conread position: | 390-798 |
| Cow position: | chr7:42879222-42878817 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 352, 81 |
| Conread position: | 390-840 |
| Cow position: | chr7:1014993-1015440 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 272 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 96, 106 |
| Conread position: | 398-802 |
| Cow position: | chr7:3179759-3180160 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 159, 91 |
| Conread position: | 401-784 |
| Cow position: | chr7:11601289-11600910 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 45, 60 |
| Conread position: | 402-815 |
| Cow position: | chr7:11600869-11600459 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 27, 20 |
| Conread position: | 413-804 |
| Cow position: | chr7:8324810-8325198 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 328, 66 |
| Conread position: | 415-796 |
| Cow position: | chr7:8278179-8278555 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 324, 59 |
| Conread position: | 415-821 |
| Cow position: | chr7:8278011-8278413 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 273 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 240, 74 |
| Conread position: | 415-825 |
| Cow position: | chr7:8325400-8325807 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 234, 45 |
| Conread position: | 415-840 |
| Cow position: | chr7:8277927-8278349 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 278 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 168, 50 |
| Conread position: | 415-840 |
| Cow position: | chr7:8324896-8325318 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 273 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 54, 44 |
| Conread position: | 415-840 |
| Cow position: | chr7:8325064-8325486 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 275 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 138, 73 |
| Conread position: | 415-840 |
| Cow position: | chr7:8325316-8325738 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 126, 64 |
| Conread position: | 418-714 |
| Cow position: | chr7:8325823-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 214, 62 |
| Conread position: | 418-791 |
| Cow position: | chr7:3180535-3180904 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 63, 78 |
| Conread position: | 418-823 |
| Cow position: | chr7:8243384-8243786 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 135, 45 |
| Conread position: | 418-824 |
| Cow position: | chr7:8277258-8277661 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 375, 48 |
| Conread position: | 418-840 |
| Cow position: | chr7:8277426-8277845 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 418-840 |
| Cow position: | chr7:8324983-8325402 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 143, 56 |
| Conread position: | 419-822 |
| Cow position: | chr7:8243637-8244034 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 314, 66 |
| Conread position: | 423-628 |
| Cow position: | chr7:11434484-11434282 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 423-797 |
| Cow position: | chr7:8277599-8277970 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 243 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 423-799 |
| Cow position: | chr7:8277683-8278056 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 254 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 135, 62 |
| Conread position: | 423-840 |
| Cow position: | chr7:8325576-8325990 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 218, 59 |
| Conread position: | 423-840 |
| Cow position: | chr7:8325660-8326074 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 280 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 426-840 |
| Cow position: | chr7:8277518-8277929 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 271 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 85, 53 |
| Conread position: | 429-837 |
| Cow position: | chr7:8243144-8243548 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 265 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 72, 53 |
| Conread position: | 496-797 |
| Cow position: | chr7:18390319-18390620 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 77, 87 |
| Conread position: | 496-840 |
| Cow position: | chr7:8325310-8325654 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 246 |
| Conread position: | 496-840 |
| Cow position: | chr7:8325562-8325906 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 230 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 62, 56 |
| Conread position: | 498-840 |
| Cow position: | chr7:42879283-42878943 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 244, 15 |
| Conread position: | 499-840 |
| Cow position: | chr7:8277252-8277593 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 47 |
| Conread position: | 499-840 |
| Cow position: | chr7:8324725-8325066 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 65, 57 |
| Conread position: | 500-796 |
| Cow position: | chr7:1439967-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 149, 124 |
| Conread position: | 500-837 |
| Cow position: | chr7:1439629-1439969 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 84 |
| Conread position: | 503-779 |
| Cow position: | chr7:11434820-11434544 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 146, 132 |
| Conread position: | 503-796 |
| Cow position: | chr7:3179777-3180070 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 141, 129 |
| Conread position: | 503-797 |
| Cow position: | chr7:3180281-3180575 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 503-797 |
| Cow position: | chr7:11601107-11600813 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 238, 244 |
| Conread position: | 503-808 |
| Cow position: | chr7:8243634-8243939 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 57, 64 |
| Conread position: | 503-837 |
| Cow position: | chr7:1014851-1015185 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 503-840 |
| Cow position: | chr7:8243047-8243383 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 226 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 324, 0 |
| Conread position: | 503-840 |
| Cow position: | chr7:8243382-8243719 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 60, 67 |
| Conread position: | 503-840 |
| Cow position: | chr7:8277928-8278265 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 146, 125 |
| Conread position: | 503-840 |
| Cow position: | chr7:11434652-11434322 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 61, 67 |
| Conread position: | 504-797 |
| Cow position: | chr7:1014768-1015061 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 53, 44 |
| Conread position: | 504-840 |
| Cow position: | chr7:8277425-8277761 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 223 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 230, 217 |
| Conread position: | 504-840 |
| Cow position: | chr7:18390243-18390579 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 228, 239 |
| Conread position: | 505-808 |
| Cow position: | chr7:1014685-1014988 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 508-796 |
| Cow position: | chr7:1014274-1014562 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 65, 75 |
| Conread position: | 508-828 |
| Cow position: | chr7:8324818-8325138 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 128 |
| Conread position: | 510-772 |
| Cow position: | chr7:11434484-11434222 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 224, 207 |
| Conread position: | 510-798 |
| Cow position: | chr7:18390165-18390453 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 49, 29 |
| Conread position: | 512-830 |
| Cow position: | chr7:8242804-8243124 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 41, 58 |
| Conread position: | 575-825 |
| Cow position: | chr7:11434503-11434253 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 158, 169 |
| Conread position: | 583-837 |
| Cow position: | chr7:11434824-11434570 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 157, 141 |
| Conread position: | 583-840 |
| Cow position: | chr7:42879284-42879027 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 134, 160 |
| Conread position: | 587-797 |
| Cow position: | chr7:8277256-8277466 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 66, 53 |
| Conread position: | 590-840 |
| Cow position: | chr7:11601188-11600938 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 161, 153 |
Show alignments to all cow chromosomes.