Cow genome map


           Conread name:
           Ss1.1-rcki016_h19.5
        

               Conread position:
               128-250
               

               Cow position:
               
               

               Alignm length:
               124
               

               Alignm identity:
               96
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               64, 68
               

               Conread position:
               128-254
               

               Cow position:
               
               

               Alignm length:
               127
               

               Alignm identity:
               104
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               133-256
               

               Cow position:
               
               

               Alignm length:
               124
               

               Alignm identity:
               95
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               135-263
               

               Cow position:
               
               

               Alignm length:
               129
               

               Alignm identity:
               102
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               142-259
               

               Cow position:
               
               

               Alignm length:
               118
               

               Alignm identity:
               91
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               342-796
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               285
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               10, 147
               

               Conread position:
               351-746
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               252
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               25, 136
               

               Conread position:
               356-816
               

               Cow position:
               
               

               Alignm length:
               467
               

               Alignm identity:
               297
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               20, 126
               

               Conread position:
               356-840
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               303
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               26, 63
               

               Conread position:
               357-795
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               275
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               34, 112
               

               Conread position:
               374-770
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               238
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               367, 114
               

               Conread position:
               383-840
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               285
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               106, 113
               

               Conread position:
               384-800
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               249
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               358, 104
               

               Conread position:
               388-712
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               113, 24
               

               Conread position:
               389-768
               

               Cow position:
               
               

               Alignm length:
               383
               

               Alignm identity:
               237
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               97, 107
               

               Conread position:
               389-796
               

               Cow position:
               
               

               Alignm length:
               409
               

               Alignm identity:
               255
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               353, 96
               

               Conread position:
               389-835
               

               Cow position:
               
               

               Alignm length:
               450
               

               Alignm identity:
               290
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               72, 81
               

               Conread position:
               389-840
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 99
               

               Conread position:
               389-840
               

               Cow position:
               
               

               Alignm length:
               455
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 107
               

               Conread position:
               390-714
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               96, 105
               

               Conread position:
               390-769
               

               Cow position:
               
               

               Alignm length:
               380
               

               Alignm identity:
               243
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               390-798
               

               Cow position:
               
               

               Alignm length:
               411
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               96, 102
               

               Conread position:
               390-798
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               259
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               352, 81
               

               Conread position:
               390-840
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               272
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               96, 106
               

               Conread position:
               398-802
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               253
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               159, 91
               

               Conread position:
               401-784
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               251
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               45, 60
               

               Conread position:
               402-815
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               265
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               27, 20
               

               Conread position:
               413-804
               

               Cow position:
               
               

               Alignm length:
               393
               

               Alignm identity:
               256
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               328, 66
               

               Conread position:
               415-796
               

               Cow position:
               
               

               Alignm length:
               383
               

               Alignm identity:
               240
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               324, 59
               

               Conread position:
               415-821
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               273
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               240, 74
               

               Conread position:
               415-825
               

               Cow position:
               
               

               Alignm length:
               412
               

               Alignm identity:
               260
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               234, 45
               

               Conread position:
               415-840
               

               Cow position:
               
               

               Alignm length:
               430
               

               Alignm identity:
               278
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               168, 50
               

               Conread position:
               415-840
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               273
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               54, 44
               

               Conread position:
               415-840
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               275
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               138, 73
               

               Conread position:
               415-840
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               279
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               126, 64
               

               Conread position:
               418-714
               

               Cow position:
               
               

               Alignm length:
               299
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               214, 62
               

               Conread position:
               418-791
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               63, 78
               

               Conread position:
               418-823
               

               Cow position:
               
               

               Alignm length:
               409
               

               Alignm identity:
               258
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               135, 45
               

               Conread position:
               418-824
               

               Cow position:
               
               

               Alignm length:
               408
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               375, 48
               

               Conread position:
               418-840
               

               Cow position:
               
               

               Alignm length:
               423
               

               Alignm identity:
               269
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               418-840
               

               Cow position:
               
               

               Alignm length:
               424
               

               Alignm identity:
               268
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               143, 56
               

               Conread position:
               419-822
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               259
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               314, 66
               

               Conread position:
               423-628
               

               Cow position:
               
               

               Alignm length:
               206
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               423-797
               

               Cow position:
               
               

               Alignm length:
               375
               

               Alignm identity:
               243
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               423-799
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               254
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               135, 62
               

               Conread position:
               423-840
               

               Cow position:
               
               

               Alignm length:
               419
               

               Alignm identity:
               268
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               218, 59
               

               Conread position:
               423-840
               

               Cow position:
               
               

               Alignm length:
               423
               

               Alignm identity:
               280
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               46, 33
               

               Conread position:
               426-840
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               271
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               85, 53
               

               Conread position:
               429-837
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               265
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               72, 53
               

               Conread position:
               496-797
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               194
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               77, 87
               

               Conread position:
               496-840
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               250, 246
               

               Conread position:
               496-840
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               230
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               62, 56
               

               Conread position:
               498-840
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               244, 15
               

               Conread position:
               499-840
               

               Cow position:
               
               

               Alignm length:
               345
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               80, 47
               

               Conread position:
               499-840
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               230
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               65, 57
               

               Conread position:
               500-796
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               149, 124
               

               Conread position:
               500-837
               

               Cow position:
               
               

               Alignm length:
               345
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               46, 84
               

               Conread position:
               503-779
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               188
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               146, 132
               

               Conread position:
               503-796
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               141, 129
               

               Conread position:
               503-797
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               193
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               503-797
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               238, 244
               

               Conread position:
               503-808
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               197
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               57, 64
               

               Conread position:
               503-837
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               216
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               58, 67
               

               Conread position:
               503-840
               

               Cow position:
               
               

               Alignm length:
               338
               

               Alignm identity:
               226
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               324, 0
               

               Conread position:
               503-840
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               214
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               60, 67
               

               Conread position:
               503-840
               

               Cow position:
               
               

               Alignm length:
               341
               

               Alignm identity:
               231
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               146, 125
               

               Conread position:
               503-840
               

               Cow position:
               
               

               Alignm length:
               340
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               61, 67
               

               Conread position:
               504-797
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               53, 44
               

               Conread position:
               504-840
               

               Cow position:
               
               

               Alignm length:
               338
               

               Alignm identity:
               223
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               230, 217
               

               Conread position:
               504-840
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               228, 239
               

               Conread position:
               505-808
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               508-796
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               65, 75
               

               Conread position:
               508-828
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 128
               

               Conread position:
               510-772
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               187
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               224, 207
               

               Conread position:
               510-798
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               49, 29
               

               Conread position:
               512-830
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               41, 58
               

               Conread position:
               575-825
               

               Cow position:
               
               

               Alignm length:
               253
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               158, 169
               

               Conread position:
               583-837
               

               Cow position:
               
               

               Alignm length:
               257
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               157, 141
               

               Conread position:
               583-840
               

               Cow position:
               
               

               Alignm length:
               260
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               134, 160
               

               Conread position:
               587-797
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               66, 53
               

               Conread position:
               590-840
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               161, 153
               
Show alignments to all cow chromosomes.