Cow genome map
| Conread name: | Ss1.1-rcki016_h19.5 |
| Conread position: | 132-259 |
| Cow position: | chr8:45148258-45148385 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 65 |
| Conread position: | 356-754 |
| Cow position: | chr8:45201539-45201937 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 20, 126 |
| Conread position: | 356-829 |
| Cow position: | chr8:45201455-45201928 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 297 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 21, 12 |
| Conread position: | 358-709 |
| Cow position: | chr8:45201625-45201976 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 17, 124 |
| Conread position: | 374-796 |
| Cow position: | chr8:48407256-48406837 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 76, 94 |
| Conread position: | 374-824 |
| Cow position: | chr8:55581112-55581559 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 274 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 112, 122 |
| Conread position: | 383-840 |
| Cow position: | chr8:46816008-46816462 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 339, 99 |
| Conread position: | 384-769 |
| Cow position: | chr8:46816429-46816811 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 384-835 |
| Cow position: | chr8:46816849-46817297 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 272 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 77, 86 |
| Conread position: | 384-840 |
| Cow position: | chr8:45201234-45201687 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 117, 101 |
| Conread position: | 387-797 |
| Cow position: | chr8:46816348-46816755 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 186, 98 |
| Conread position: | 388-796 |
| Cow position: | chr8:46816181-46816586 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 254 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 134, 93 |
| Conread position: | 391-796 |
| Cow position: | chr8:48407491-48407089 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 95, 105 |
| Conread position: | 398-778 |
| Cow position: | chr8:55581220-55581597 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 88, 98 |
| Conread position: | 401-840 |
| Cow position: | chr8:55580887-55581323 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 94, 80 |
| Conread position: | 418-784 |
| Cow position: | chr8:45201100-45201463 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 245 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 83, 61 |
| Conread position: | 418-796 |
| Cow position: | chr8:46815871-46816250 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 11, 71 |
| Conread position: | 418-796 |
| Cow position: | chr8:46816631-46817006 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 143, 54 |
| Conread position: | 418-840 |
| Cow position: | chr8:46816127-46816546 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 423-797 |
| Cow position: | chr8:45200937-45201308 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 241 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 88, 65 |
| Conread position: | 423-797 |
| Cow position: | chr8:45201021-45201392 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 78, 56 |
| Conread position: | 427-797 |
| Cow position: | chr8:45201445-45201812 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 247 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 59, 69 |
| Conread position: | 429-800 |
| Cow position: | chr8:46816558-46816926 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 56, 66 |
| Conread position: | 496-824 |
| Cow position: | chr8:45201427-45201755 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 5, 13 |
| Conread position: | 503-712 |
| Cow position: | chr8:6958000-6957791 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 503-784 |
| Cow position: | chr8:55581070-55581351 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 239, 244 |
| Conread position: | 503-797 |
| Cow position: | chr8:48407214-48406920 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 141, 132 |
| Conread position: | 503-797 |
| Cow position: | chr8:48407550-48407256 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 239, 247 |
| Conread position: | 503-840 |
| Cow position: | chr8:46816377-46816714 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 303, 297 |
| Conread position: | 503-840 |
| Cow position: | chr8:55580818-55581155 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 504-796 |
| Cow position: | chr8:46817050-46817342 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 211, 217 |
| Conread position: | 510-835 |
| Cow position: | chr8:48407291-48406966 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 110, 130 |
| Conread position: | 517-778 |
| Cow position: | chr8:48407620-48407359 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 225, 234 |
| Conread position: | 528-754 |
| Cow position: | chr8:6958059-6957833 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 45, 54 |
| Conread position: | 611-816 |
| Cow position: | chr8:6958060-6957855 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 109, 105 |
Show alignments to all cow chromosomes.