Cow genome map
| Conread name: | Ss1.1-rcki016_h19.5 |
| Conread position: | 126-487 |
| Cow position: | chrX:12626866-12627224 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 131, 45 |
| Conread position: | 128-262 |
| Cow position: | chrX:29040694-29040828 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 132-259 |
| Cow position: | chrX:25307063-25307190 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 374-797 |
| Cow position: | chrX:29045222-29044802 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 87, 105 |
| Conread position: | 376-837 |
| Cow position: | chrX:25309930-25310388 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 125, 109 |
| Conread position: | 384-837 |
| Cow position: | chrX:25324951-25324501 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 265, 98 |
| Conread position: | 387-702 |
| Cow position: | chrX:29045692-29045380 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 107 |
| Conread position: | 388-837 |
| Cow position: | chrX:25325703-25325257 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 289 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 73, 87 |
| Conread position: | 390-770 |
| Cow position: | chrX:29045038-29044661 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 96, 106 |
| Conread position: | 390-797 |
| Cow position: | chrX:25324777-25324373 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 94, 82 |
| Conread position: | 390-840 |
| Cow position: | chrX:25325365-25324918 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 271 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 96, 106 |
| Conread position: | 393-840 |
| Cow position: | chrX:25324690-25324246 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 271 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 108, 86 |
| Conread position: | 395-797 |
| Cow position: | chrX:25325108-25324709 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 347, 87 |
| Conread position: | 397-797 |
| Cow position: | chrX:25324854-25324457 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 355, 82 |
| Conread position: | 403-797 |
| Cow position: | chrX:25325268-25324877 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 260 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 98, 69 |
| Conread position: | 418-840 |
| Cow position: | chrX:12627604-12628022 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 224, 45 |
| Conread position: | 497-712 |
| Cow position: | chrX:12627846-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 497-765 |
| Cow position: | chrX:25324506-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 7, 83 |
| Conread position: | 497-776 |
| Cow position: | chrX:29045753-29045474 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 245, 252 |
| Conread position: | 497-797 |
| Cow position: | chrX:12627596-12627895 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 50, 83 |
| Conread position: | 503-796 |
| Cow position: | chrX:12627351-12627643 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 58, 68 |
| Conread position: | 503-797 |
| Cow position: | chrX:25325507-25325213 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 53, 44 |
| Conread position: | 504-800 |
| Cow position: | chrX:25309719-25310015 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 238, 243 |
| Conread position: | 505-835 |
| Cow position: | chrX:29045178-29044848 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 68, 73 |
| Conread position: | 508-765 |
| Cow position: | chrX:25310311-25310568 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 70, 53 |
| Conread position: | 510-798 |
| Cow position: | chrX:25310145-25310433 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 232, 237 |
| Conread position: | 512-825 |
| Cow position: | chrX:25309811-25310124 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 516-819 |
| Cow position: | chrX:12627280-12627582 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 132, 138 |
| Conread position: | 575-796 |
| Cow position: | chrX:29045759-29045538 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 157, 168 |
Show alignments to all cow chromosomes.