Cow genome map
| Conread name: | Ss1.1-rcli18b_i7.5.5 |
| Conread position: | 35-702 |
| Cow position: | chr21:39153003-39152363 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 60 |
| Conread position: | 35-702 |
| Cow position: | chr21:40604841-40605481 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 479, 81 |
| Conread position: | 35-702 |
| Cow position: | chr21:40655209-40654569 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 64 |
| Conread position: | 35-702 |
| Cow position: | chr21:40677263-40676614 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 35-702 |
| Cow position: | chr21:40705409-40704769 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 60 |
| Conread position: | 35-709 |
| Cow position: | chr21:40639740-40639084 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 81 |
| Conread position: | 65-707 |
| Cow position: | chr21:39247551-39248190 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 391 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 87, 44 |
| Conread position: | 203-485 |
| Cow position: | chr21:39175677-39175394 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 13, 110 |
| Conread position: | 214-709 |
| Cow position: | chr21:39199258-39198768 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 276, 58 |
| Conread position: | 219-702 |
| Cow position: | chr21:39304885-39305365 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 43 |
| Conread position: | 220-707 |
| Cow position: | chr21:38962547-38962060 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 222-702 |
| Cow position: | chr21:38910076-38909596 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 341 |
| Conread position: | 701-911 |
| Cow position: | chr21:40607405-40607612 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 701-976 |
| Cow position: | chr21:39149955-39149683 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 701-976 |
| Cow position: | chr21:40637247-40636972 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 701-976 |
| Cow position: | chr21:40652739-40652467 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 701-976 |
| Cow position: | chr21:40674986-40674714 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 107 |
| Conread position: | 701-976 |
| Cow position: | chr21:40702935-40702663 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 975-1129 |
| Cow position: | chr21:40672637-40672483 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 975-1130 |
| Cow position: | chr21:39148551-39148399 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 975-1130 |
| Cow position: | chr21:40650859-40650707 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 975-1130 |
| Cow position: | chr21:40701527-40701375 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 975-1133 |
| Cow position: | chr21:40626533-40626374 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 975-1135 |
| Cow position: | chr21:40634371-40634210 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 134, 140 |
| Conread position: | 980-1130 |
| Cow position: | chr21:40610220-40610370 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1125-1310 |
| Cow position: | chr21:39147350-39147168 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 149 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1125-1310 |
| Cow position: | chr21:40611952-40612136 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 70, 50 |
| Conread position: | 1125-1310 |
| Cow position: | chr21:40649650-40649465 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 146 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1125-1310 |
| Cow position: | chr21:40700321-40700139 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 1125-1373 |
| Cow position: | chr21:40633161-40632894 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 198 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1125-1494 |
| Cow position: | chr21:40671456-40671082 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 204 |
| Conread position: | 1226-1494 |
| Cow position: | chr21:40624996-40624723 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 1370-1493 |
| Cow position: | chr21:39147062-39146938 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 44, 121 |
| Conread position: | 1370-1493 |
| Cow position: | chr21:40700032-40699908 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 44, 121 |
Show alignments to all cow chromosomes.