• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Ss1.1-rcmu23_o12.5
        

               
Conread position:
               
1-104
               

               
Cow position:
               
chr21:4541174-4541067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-104
               

               
Cow position:
               
chr21:12802082-12801978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
1-105
               

               
Cow position:
               
chr21:8451544-8451647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
1-105
               

               
Cow position:
               
chr21:27521694-27521590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-109
               

               
Cow position:
               
chr21:3047363-3047471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-109
               

               
Cow position:
               
chr21:10045935-10046045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
1-115
               

               
Cow position:
               
chr21:33155023-33155137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr21:48531209-48531324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr21:14452525-14452643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr21:14742949-14743067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr21:17196809-17196692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr21:18601359-18601477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr21:31040740-31040620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr21:34586715-34586596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr21:35573187-35573070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr21:44761657-44761539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-122
               

               
Cow position:
               
chr21:11082922-11082801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr21:39019958-39020083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr21:14238253-14238378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chr21:16278410-16278537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-134
               

               
Cow position:
               
chr21:21961231-21961363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-137
               

               
Cow position:
               
chr21:29999882-29999746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-144
               

               
Cow position:
               
chr21:19237417-19237558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
1-144
               

               
Cow position:
               
chr21:29839865-29840005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
1-145
               

               
Cow position:
               
chr21:42487235-42487380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
1-147
               

               
Cow position:
               
chr21:7666357-7666213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
1-151
               

               
Cow position:
               
chr21:22334899-22335047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr21:1765501-1765340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr21:32190868-32191039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
1-174
               

               
Cow position:
               
chr21:13735133-13734960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chr21:44658017-44658191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr21:2984092-2983915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
126, 142
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr21:5009478-5009302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr21:33415092-33414916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
169, 101
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr21:2657290-2657466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr21:9980989-9980823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr21:27712737-27712554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr21:3635031-3634836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 111
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr21:27076-27276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr21:36762748-36762950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
31, 185
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr21:10624173-10623968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr21:19439163-19439367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
178, 19
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr21:45971456-45971254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
181, 62
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr21:37122354-37122145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr21:24698181-24698397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr21:10642300-10642502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
197, 55
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr21:4035293-4035083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
178, 11
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr21:36909520-36909737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
90, 63
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr21:45263322-45263107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
181, 129
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr21:31948591-31948810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
175, 0
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr21:31950442-31950661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
175, 0
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr21:167946-167730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
178, 202
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr21:25042188-25042409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr21:19702223-19702445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
139, 146
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr21:40530603-40530383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
187, 86
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr21:5840871-5841102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
150, 137
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr21:34685049-34685280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr21:25158592-25158821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
181, 97
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr21:12338872-12339101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
179, 58
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr21:47823568-47823341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
175, 98
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr21:40265532-40265769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 210
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr21:11195830-11196082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
138, 179
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr21:4279333-4279585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 46
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr21:22856878-22857134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
178, 63
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr21:23449280-23449525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
150, 34
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr21:44804561-44804309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
133, 92
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr21:8289940-8289686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
173, 55
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr21:12973552-12973302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
9, 59
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr21:15742398-15742148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
97, 183
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr21:18979156-18978896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
98, 55
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr21:20549218-20548960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
97, 7
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr21:29942701-29942957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
105, 37
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr21:37297613-37297372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
180, 77
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr21:13300851-13301104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 130
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr21:17262413-17262164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
175, 59
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr21:19668693-19668448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
178, 57
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr21:24297064-24296820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr21:32447241-32447499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr21:44331586-44331333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
28, 19
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr21:30354871-30355127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
99, 52
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr21:10571299-10571557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
141, 208
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr21:31436045-31436306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
89, 138
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr21:32894471-32894223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr21:30904902-30904645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
179, 89
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr21:17218914-17218654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
174, 52
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr21:26097711-26097444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
175, 129
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr21:21103747-21104015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr21:31039653-31039386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr21:45372054-45372321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr21:19626681-19626412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 0
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr21:3920513-3920247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
114, 178
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr21:5153316-5153581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 210
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr21:46777274-46777006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 213
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr21:41032980-41033247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
55, 132
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr21:703468-703185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 130
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr21:750437-750716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
178, 245
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr21:1781052-1781330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
150, 47
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr21:13111098-13110818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr21:30626484-30626205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 126
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr21:37924212-37924496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
143, 250
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr21:47429369-47429648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
150, 79
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr21:3782799-3783080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 141
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr21:24136617-24136897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 118
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr21:27376148-27376428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr21:30595052-30594767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 52
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr21:35823190-35822916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
110, 7
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr21:44281134-44280849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
26, 137
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr21:2877813-2877527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 137
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr21:7815011-7814725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 38
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr21:13954210-13954498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr21:17411808-17411527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
181, 187
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr21:19501724-19502010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr21:23900108-23899822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 269
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr21:27065429-27065149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
175, 109
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr21:28259696-28259980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 149
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr21:28914664-28914380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
150, 137
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr21:29954919-29955205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr21:30566719-30567002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
150, 27
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr21:35068061-35068347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr21:36225446-36225732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr21:39061547-39061833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 176
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr21:39700377-39700091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 269
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr21:40267129-40266850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
178, 207
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr21:43402291-43402009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
150, 69
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr21:47767684-47767400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
178, 237
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr21:17616617-17616339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
178, 86
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr21:21170243-21169960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 205
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr21:24130785-24131061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
195, 47
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr21:31158954-31159244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 58
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr21:34251834-34251555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
187, 129
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr21:37874217-37874503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
150, 126
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr21:7452425-7452136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
178, 7
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr21:2709861-2709566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr21:4794920-4795215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 211
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr21:33263550-33263840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 97
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr21:451903-452202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
150, 137
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr21:5857437-5857139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
178, 125
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr21:26756696-26756398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
178, 147
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr21:36505537-36505239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
130, 27
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr21:37322593-37322309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
103, 130
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr21:22349842-22350144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
139, 58
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr21:32297803-32297513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 135
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:4428387-4428679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
150, 137
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:4569799-4569495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
114, 144
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:26835596-26835294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
150, 137
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:33933685-33933383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
150, 137
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr21:5649605-5649905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 147
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr21:5021167-5021474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 269
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr21:7717088-7716783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 13
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr21:150175-150481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 206
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr21:1196566-1196876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 269
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr21:2495472-2495165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 85
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr21:3987787-3987476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 137
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr21:4080053-4080363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 144
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr21:4998786-4998482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 135
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr21:8981425-8981121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
178, 110
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr21:18718368-18718677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 85
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr21:21968018-21968321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr21:25382697-25383018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
92, 180
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr21:28210884-28211201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
110, 264
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr21:28512240-28512533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr21:28993927-28993617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 252
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr21:33420017-33419719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 178
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr21:38867868-38867568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
49, 103
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr21:45151932-45151615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 156
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr21:29500605-29500916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
150, 137
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr21:32191870-32192180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 57
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr21:13070161-13069849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
130, 57
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr21:21785388-21785073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr21:25193494-25193809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
179, 165
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr21:27607664-27607346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
150, 137
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr21:34658735-34659044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 36
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr21:5595363-5595674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 86
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr21:9209335-9209648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
178, 233
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr21:19614272-19614593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 305
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr21:25344577-25344887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
262, 129
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr21:34909890-34910209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 303
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr21:36781154-36781468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
150, 87
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr21:5344360-5344679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 131
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr21:17174846-17175172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
132, 108
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr21:6623847-6624182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
101, 79
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr21:26829536-26829233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
306, 88
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr21:1463932-1464259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
187, 112
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr21:23785727-23786058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
98, 138
               

               
Conread position:
               
1-330
               

               
Cow position:
               
chr21:39401299-39401625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 135
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr21:5455287-5454957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
100, 133
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr21:10071230-10070900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
248, 183
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr21:16789420-16789755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 305
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr21:24887696-24888040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
76, 58
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr21:32574430-32574751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
105, 177
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr21:44671452-44671783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 252
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr21:48484741-48484415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 96
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chr21:42190459-42190142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 47
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr21:28617301-28617628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
165, 86
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chr21:4905268-4904927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 123
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chr21:5596859-5597190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
178, 67
               

               
Conread position:
               
1-342
               

               
Cow position:
               
chr21:2786093-2785734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
92, 164
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr21:18494677-18495012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 68
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr21:30849245-30848904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
90, 165
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chr21:27341891-27341549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
178, 69
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr21:37941983-37941638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
149, 88
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr21:1815261-1814909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
139, 25
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr21:12616841-12617195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 86
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr21:2904763-2904418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
130, 183
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr21:11645286-11644906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
99, 223
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr21:24858010-24858375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 252
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr21:29214456-29214100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
126, 88
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr21:32535678-32536037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 27
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr21:37479658-37480015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 90
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr21:36756314-36756661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
140, 66
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:643036-643386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 120
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:725191-724822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 99
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:912262-911904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 45
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:8985248-8985614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 210
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:10514511-10514868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
178, 97
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:11228255-11227899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
262, 176
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:13897892-13898250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 97
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:14760284-14760636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 52
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:15976340-15976695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 81
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:18850527-18850164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
90, 188
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:20160383-20160738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 129
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:20925806-20925441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 55
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:24222842-24222475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 88
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:25764333-25764698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
48, 130
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:27230093-27229729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 94
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:27743440-27743811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 166
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:27863820-27863451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 129
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:28881848-28882199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 95
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:31691180-31691547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 103
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:34391267-34390913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 57
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:35897922-35897577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
80, 88
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:37706718-37706353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
110, 43
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:38120802-38121163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 211
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:41974680-41974312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 144
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:42540522-42540160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 11
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:45916005-45915652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
260, 147
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr21:641286-641650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 19
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr21:5238105-5238452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
152, 91
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr21:20045068-20044699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
181, 85
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr21:24796335-24795969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 79
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr21:39664672-39664333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
252, 32
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr21:40244133-40244510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 337
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr21:17144847-17145221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 269
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr21:42558803-42559166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
150, 137
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chr21:4585650-4585291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
262, 96
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chr21:16696069-16696435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 152
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chr21:19766553-19766922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 180
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chr21:42500735-42501112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 24
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr21:6765003-6764631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 147
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr21:7564623-7564238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 147
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr21:13048497-13048124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 82
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr21:15584700-15584350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 69
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr21:24607082-24607455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 306
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chr21:2420204-2420572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
195, 109
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr21:3236231-3236599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 135
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr21:6833751-6834122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 149
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr21:23984585-23984207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 266
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr21:36163264-36162886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 215
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr21:40786370-40786751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 55
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr21:43240558-43240938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
180, 70
               

               
Conread position:
               
1-380
               

               
Cow position:
               
chr21:4098581-4098948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
92, 7
               

               
Conread position:
               
1-380
               

               
Cow position:
               
chr21:4399499-4399878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 96
               

               
Conread position:
               
1-380
               

               
Cow position:
               
chr21:7582206-7581830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 115
               

               
Conread position:
               
1-380
               

               
Cow position:
               
chr21:28989317-28989685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
33, 114
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr21:2472748-2472363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
132, 148
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr21:19614876-19615254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 52
               

               
Conread position:
               
1-462
               

               
Cow position:
               
chr21:20262635-20262171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 247
               

               
Conread position:
               
1-479
               

               
Cow position:
               
chr21:30990569-30990096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 129
               

               
Conread position:
               
2-106
               

               
Cow position:
               
chr21:8910339-8910235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-109
               

               
Cow position:
               
chr21:44861555-44861448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-119
               

               
Cow position:
               
chr21:16889814-16889697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-122
               

               
Cow position:
               
chr21:3496477-3496357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-128
               

               
Cow position:
               
chr21:1752420-1752545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
120, 111
               

               
Conread position:
               
2-128
               

               
Cow position:
               
chr21:2663503-2663380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
2-135
               

               
Cow position:
               
chr21:39672374-39672507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-138
               

               
Cow position:
               
chr21:11024290-11024154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-138
               

               
Cow position:
               
chr21:11353522-11353658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-138
               

               
Cow position:
               
chr21:19350832-19350696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-138
               

               
Cow position:
               
chr21:25738177-25738041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-138
               

               
Cow position:
               
chr21:39675039-39675176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
2-142
               

               
Cow position:
               
chr21:23658244-23658384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-165
               

               
Cow position:
               
chr21:43317582-43317414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
103, 44
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr21:47978297-47978463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
2-174
               

               
Cow position:
               
chr21:12331461-12331632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
2-174
               

               
Cow position:
               
chr21:42442907-42442736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
2-177
               

               
Cow position:
               
chr21:443730-443905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-177
               

               
Cow position:
               
chr21:33579889-33580062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
32, 90
               

               
Conread position:
               
2-177
               

               
Cow position:
               
chr21:42917823-42917998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-178
               

               
Cow position:
               
chr21:26865146-26865318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
2-200
               

               
Cow position:
               
chr21:10756941-10757143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-200
               

               
Cow position:
               
chr21:22370866-22370664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
76, 72
               

               
Conread position:
               
2-201
               

               
Cow position:
               
chr21:15531067-15531261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
66, 97
               

               
Conread position:
               
2-201
               

               
Cow position:
               
chr21:40178090-40178292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
153, 127
               

               
Conread position:
               
2-202
               

               
Cow position:
               
chr21:2847332-2847128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
6, 12
               

               
Conread position:
               
2-202
               

               
Cow position:
               
chr21:3923942-3924146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-208
               

               
Cow position:
               
chr21:17452314-17452105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
171, 68
               

               
Conread position:
               
2-216
               

               
Cow position:
               
chr21:2871016-2870798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-216
               

               
Cow position:
               
chr21:27500495-27500713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-225
               

               
Cow position:
               
chr21:34511542-34511314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
2-251
               

               
Cow position:
               
chr21:26632963-26632710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
177, 57
               

               
Conread position:
               
2-251
               

               
Cow position:
               
chr21:30897124-30897367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
188, 6
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chr21:36657280-36657520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
150, 91
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr21:2935054-2934795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr21:22140638-22140388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
27, 129
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr21:25603481-25603233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 86
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr21:30192488-30192233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
65, 126
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr21:31278482-31278729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 95
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr21:34894911-34895163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
154, 130
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr21:39883768-39884012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
188, 92
               

               
Conread position:
               
2-254
               

               
Cow position:
               
chr21:426492-426745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 106
               

               
Conread position:
               
2-254
               

               
Cow position:
               
chr21:25475839-25476082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
174, 15
               

               
Conread position:
               
2-255
               

               
Cow position:
               
chr21:14762809-14762550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
2-255
               

               
Cow position:
               
chr21:18712986-18713236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 104
               

               
Conread position:
               
2-255
               

               
Cow position:
               
chr21:34899654-34899396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
138, 186
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr21:26875621-26875883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
2-257
               

               
Cow position:
               
chr21:47139993-47139736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
177, 234
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr21:8219552-8219815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
10, 31
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr21:27288006-27288266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
178, 221
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr21:39434131-39434389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
173, 217
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr21:13395256-13395511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
94, 78
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr21:4473320-4473055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
131, 148
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr21:7038163-7037897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
177, 205
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr21:7597241-7596968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
68, 212
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr21:13168850-13169116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr21:18574544-18574810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr21:21910055-21910321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr21:22100170-22099904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr21:26071452-26071186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
177, 205
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr21:33709470-33709204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr21:33770707-33770973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr21:33901456-33901724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
174, 0
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr21:39561297-39561563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
177, 205
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr21:32395981-32395713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
177, 57
               

               
Conread position:
               
2-266
               

               
Cow position:
               
chr21:24082149-24081887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
102, 68
               

               
Conread position:
               
2-267
               

               
Cow position:
               
chr21:25598694-25598963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
178, 146
               

               
Conread position:
               
2-268
               

               
Cow position:
               
chr21:11292738-11293008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
177, 268
               

               
Conread position:
               
2-268
               

               
Cow position:
               
chr21:40479291-40479562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-274
               

               
Cow position:
               
chr21:15905522-15905797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-274
               

               
Cow position:
               
chr21:36377041-36377325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
157, 26
               

               
Conread position:
               
2-276
               

               
Cow position:
               
chr21:11509966-11510245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-276
               

               
Cow position:
               
chr21:33993366-33993086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
65, 210
               

               
Conread position:
               
2-277
               

               
Cow position:
               
chr21:17370183-17369904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
149, 136
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr21:661907-661622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr21:4665784-4665501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr21:5790925-5791210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr21:7525147-7525432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
177, 205
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr21:9743879-9743594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr21:16575417-16575132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr21:16795040-16795325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr21:20370395-20370680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr21:21624114-21624399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr21:23329312-23329027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr21:25076688-25076403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr21:26854663-26854378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr21:27036478-27036763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr21:30134819-30135101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
177, 68
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr21:30655669-30655954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr21:34900705-34900990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
174, 0
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr21:34955898-34956180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
174, 134
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr21:38848770-38848485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr21:41795694-41795409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
2-283
               

               
Cow position:
               
chr21:17433552-17433271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
52, 76
               

               
Conread position:
               
2-283
               

               
Cow position:
               
chr21:30250505-30250209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
177, 53
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chr21:1179236-1178939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
177, 201
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chr21:5566691-5566993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 107
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chr21:24236813-24237110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
177, 146
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chr21:25480289-25480587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chr21:27147524-27147224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chr21:30571050-30570752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
174, 0
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chr21:30688489-30688195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
177, 209
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chr21:34181695-34181988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
167, 158
               

               
Conread position:
               
2-297
               

               
Cow position:
               
chr21:19957930-19958221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
180, 75
               

               
Conread position:
               
2-297
               

               
Cow position:
               
chr21:36892202-36891904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
174, 235
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chr21:38691893-38692183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
114, 22
               

               
Conread position:
               
2-299
               

               
Cow position:
               
chr21:13763325-13763618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
194, 125
               

               
Conread position:
               
2-304
               

               
Cow position:
               
chr21:42464141-42463832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 85
               

               
Conread position:
               
2-305
               

               
Cow position:
               
chr21:17410955-17410653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
180, 75
               

               
Conread position:
               
2-306
               

               
Cow position:
               
chr21:10854286-10854597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 270
               

               
Conread position:
               
2-306
               

               
Cow position:
               
chr21:12366087-12366386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 271
               

               
Conread position:
               
2-306
               

               
Cow position:
               
chr21:34301606-34301924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
149, 136
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chr21:48262835-48263128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
66, 76
               

               
Conread position:
               
2-316
               

               
Cow position:
               
chr21:2514874-2515185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
149, 128
               

               
Conread position:
               
2-316
               

               
Cow position:
               
chr21:4897953-4897635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
177, 302
               

               
Conread position:
               
2-316
               

               
Cow position:
               
chr21:7047157-7046837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
177, 276
               

               
Conread position:
               
2-316
               

               
Cow position:
               
chr21:10436869-10437187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
177, 302
               

               
Conread position:
               
2-316
               

               
Cow position:
               
chr21:21963178-21963495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
177, 302
               

               
Conread position:
               
2-316
               

               
Cow position:
               
chr21:26628797-26629115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
177, 303
               

               
Conread position:
               
2-316
               

               
Cow position:
               
chr21:30965912-30965595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
174, 140
               

               
Conread position:
               
2-316
               

               
Cow position:
               
chr21:33235498-33235816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 302
               

               
Conread position:
               
2-316
               

               
Cow position:
               
chr21:34074667-34074985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 302
               

               
Conread position:
               
2-316
               

               
Cow position:
               
chr21:38651221-38650908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
172, 208
               

               
Conread position:
               
2-316
               

               
Cow position:
               
chr21:39486244-39485927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
177, 27
               

               
Conread position:
               
2-316
               

               
Cow position:
               
chr21:45841973-45841653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
129, 304
               

               
Conread position:
               
2-321
               

               
Cow position:
               
chr21:36642607-36642928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 209
               

               
Conread position:
               
2-327
               

               
Cow position:
               
chr21:11707050-11706717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 84
               

               
Conread position:
               
2-327
               

               
Cow position:
               
chr21:34738298-34738638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 285
               

               
Conread position:
               
2-331
               

               
Cow position:
               
chr21:17714013-17714349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
177, 238
               

               
Conread position:
               
2-331
               

               
Cow position:
               
chr21:23606374-23606707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 179
               

               
Conread position:
               
2-338
               

               
Cow position:
               
chr21:21967182-21967510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
260, 125
               

               
Conread position:
               
2-339
               

               
Cow position:
               
chr21:13128396-13128058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
50, 134
               

               
Conread position:
               
2-339
               

               
Cow position:
               
chr21:17412592-17412259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 176
               

               
Conread position:
               
2-340
               

               
Cow position:
               
chr21:33209899-33210243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 87
               

               
Conread position:
               
2-362
               

               
Cow position:
               
chr21:3813767-3813425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
178, 91
               

               
Conread position:
               
2-365
               

               
Cow position:
               
chr21:23586563-23586943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 51
               

               
Conread position:
               
2-366
               

               
Cow position:
               
chr21:395578-395930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 106
               

               
Conread position:
               
2-366
               

               
Cow position:
               
chr21:38900481-38900836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 46
               

               
Conread position:
               
2-366
               

               
Cow position:
               
chr21:44566005-44565655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
102, 91
               

               
Conread position:
               
2-367
               

               
Cow position:
               
chr21:37517665-37517309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
149, 140
               

               
Conread position:
               
2-371
               

               
Cow position:
               
chr21:48173-48546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
34, 304
               

               
Conread position:
               
2-371
               

               
Cow position:
               
chr21:33245461-33245084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
177, 151
               

               
Conread position:
               
2-371
               

               
Cow position:
               
chr21:44122755-44123126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
177, 335
               

               
Conread position:
               
2-378
               

               
Cow position:
               
chr21:18289363-18289736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 89
               

               
Conread position:
               
2-378
               

               
Cow position:
               
chr21:19196468-19196091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 303
               

               
Conread position:
               
2-378
               

               
Cow position:
               
chr21:22719080-22718710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 91
               

               
Conread position:
               
2-380
               

               
Cow position:
               
chr21:11143820-11143443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 249
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr21:2938729-2939110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 147
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr21:3364489-3364870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
177, 302
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr21:10075234-10074853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
177, 26
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr21:13930837-13931218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
177, 302
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr21:36973114-36972733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
177, 302
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr21:39224918-39224537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
177, 331
               

               
Conread position:
               
2-421
               

               
Cow position:
               
chr21:13632589-13633011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 302
               

               
Conread position:
               
2-470
               

               
Cow position:
               
chr21:17539434-17539906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 205
               

               
Conread position:
               
3-177
               

               
Cow position:
               
chr21:4559044-4558868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
3-177
               

               
Cow position:
               
chr21:18155714-18155888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-177
               

               
Cow position:
               
chr21:40013661-40013487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
148, 135
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr21:33831943-33831704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
148, 90
               

               
Conread position:
               
3-254
               

               
Cow position:
               
chr21:37352717-37352471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
161, 97
               

               
Conread position:
               
3-257
               

               
Cow position:
               
chr21:39429649-39429907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
148, 135
               

               
Conread position:
               
3-266
               

               
Cow position:
               
chr21:31576215-31576474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
141, 103
               

               
Conread position:
               
3-269
               

               
Cow position:
               
chr21:17208196-17208462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
175, 50
               

               
Conread position:
               
3-282
               

               
Cow position:
               
chr21:4732516-4732235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
148, 135
               

               
Conread position:
               
3-282
               

               
Cow position:
               
chr21:11759763-11759484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 179
               

               
Conread position:
               
3-282
               

               
Cow position:
               
chr21:48459167-48458883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
3-298
               

               
Cow position:
               
chr21:612066-611772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 103
               

               
Conread position:
               
3-306
               

               
Cow position:
               
chr21:19170209-19169902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
171, 83
               

               
Conread position:
               
3-306
               

               
Cow position:
               
chr21:23683251-23683552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 180
               

               
Conread position:
               
3-332
               

               
Cow position:
               
chr21:13703985-13703652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
95, 47
               

               
Conread position:
               
3-339
               

               
Cow position:
               
chr21:4282163-4281833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 85
               

               
Conread position:
               
3-365
               

               
Cow position:
               
chr21:30231999-30231633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 84
               

               
Conread position:
               
3-380
               

               
Cow position:
               
chr21:42414398-42414023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 84
               

               
Conread position:
               
4-120
               

               
Cow position:
               
chr21:13257372-13257488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-127
               

               
Cow position:
               
chr21:45373809-45373932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr21:27406502-27406333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
4-192
               

               
Cow position:
               
chr21:36680413-36680601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
171, 124
               

               
Conread position:
               
4-295
               

               
Cow position:
               
chr21:5641806-5641510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
175, 0
               

               
Conread position:
               
4-382
               

               
Cow position:
               
chr21:4092686-4093063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
175, 82
               

               
Conread position:
               
5-109
               

               
Cow position:
               
chr21:8617940-8618045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
5-124
               

               
Cow position:
               
chr21:16327257-16327141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
5-124
               

               
Cow position:
               
chr21:31276423-31276543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
5-141
               

               
Cow position:
               
chr21:471334-471474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
5-177
               

               
Cow position:
               
chr21:43046608-43046438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
5-180
               

               
Cow position:
               
chr21:29225356-29225184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
5-259
               

               
Cow position:
               
chr21:3173824-3174068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
147, 29
               

               
Conread position:
               
5-262
               

               
Cow position:
               
chr21:17282406-17282664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 186
               

               
Conread position:
               
5-262
               

               
Cow position:
               
chr21:28029100-28029360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 248
               

               
Conread position:
               
5-262
               

               
Cow position:
               
chr21:46132292-46132019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
69, 223
               

               
Conread position:
               
5-264
               

               
Cow position:
               
chr21:36711902-36712161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
87, 96
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr21:47760480-47760749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 135
               

               
Conread position:
               
5-271
               

               
Cow position:
               
chr21:20162238-20162507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 160
               

               
Conread position:
               
5-281
               

               
Cow position:
               
chr21:34254577-34254300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 71
               

               
Conread position:
               
5-282
               

               
Cow position:
               
chr21:29424092-29424366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
174, 110
               

               
Conread position:
               
5-282
               

               
Cow position:
               
chr21:46037527-46037254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
174, 28
               

               
Conread position:
               
5-298
               

               
Cow position:
               
chr21:25536698-25536995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
111, 88
               

               
Conread position:
               
5-298
               

               
Cow position:
               
chr21:28442437-28442742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
67, 213
               

               
Conread position:
               
5-306
               

               
Cow position:
               
chr21:363358-363654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
213, 164
               

               
Conread position:
               
5-321
               

               
Cow position:
               
chr21:22310596-22310921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
131, 54
               

               
Conread position:
               
5-327
               

               
Cow position:
               
chr21:7132758-7132439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 20
               

               
Conread position:
               
5-331
               

               
Cow position:
               
chr21:12153836-12154165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 207
               

               
Conread position:
               
5-331
               

               
Cow position:
               
chr21:24764970-24765321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
65, 142
               

               
Conread position:
               
5-338
               

               
Cow position:
               
chr21:46849416-46849088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
174, 74
               

               
Conread position:
               
5-344
               

               
Cow position:
               
chr21:33997522-33997185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 183
               

               
Conread position:
               
5-362
               

               
Cow position:
               
chr21:44514968-44515322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
93, 195
               

               
Conread position:
               
5-364
               

               
Cow position:
               
chr21:21216438-21216081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 206
               

               
Conread position:
               
5-364
               

               
Cow position:
               
chr21:46263880-46264232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 79
               

               
Conread position:
               
5-366
               

               
Cow position:
               
chr21:7672836-7673185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
256, 131
               

               
Conread position:
               
5-366
               

               
Cow position:
               
chr21:10263745-10264095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
72, 51
               

               
Conread position:
               
5-366
               

               
Cow position:
               
chr21:19363747-19363397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 102
               

               
Conread position:
               
5-366
               

               
Cow position:
               
chr21:47802559-47802197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 188
               

               
Conread position:
               
5-372
               

               
Cow position:
               
chr21:48638043-48637688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
247, 187
               

               
Conread position:
               
5-373
               

               
Cow position:
               
chr21:9415946-9416319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 45
               

               
Conread position:
               
5-376
               

               
Cow position:
               
chr21:46912247-46912618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 141
               

               
Conread position:
               
5-377
               

               
Cow position:
               
chr21:33729136-33729504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 205
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr21:28477328-28477696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 116
               

               
Conread position:
               
5-379
               

               
Cow position:
               
chr21:9862918-9862568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
250, 107
               

               
Conread position:
               
5-412
               

               
Cow position:
               
chr21:23192815-23192405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 248
               

               
Conread position:
               
5-420
               

               
Cow position:
               
chr21:31702253-31701837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 219
               

               
Conread position:
               
6-123
               

               
Cow position:
               
chr21:22464493-22464611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
6-233
               

               
Cow position:
               
chr21:684183-684415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
101, 125
               

               
Conread position:
               
6-253
               

               
Cow position:
               
chr21:10960115-10959862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
6-338
               

               
Cow position:
               
chr21:40058509-40058845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 136
               

               
Conread position:
               
6-366
               

               
Cow position:
               
chr21:28734209-28733850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 205
               

               
Conread position:
               
7-251
               

               
Cow position:
               
chr21:6956459-6956218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
100, 37
               

               
Conread position:
               
7-298
               

               
Cow position:
               
chr21:23479011-23478721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
13, 20
               

               
Conread position:
               
8-101
               

               
Cow position:
               
chr21:13303235-13303328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-117
               

               
Cow position:
               
chr21:21076834-21076942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
8-119
               

               
Cow position:
               
chr21:26557352-26557241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-134
               

               
Cow position:
               
chr21:17422716-17422593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
8-160
               

               
Cow position:
               
chr21:6697386-6697234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-177
               

               
Cow position:
               
chr21:45752-45920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
8-202
               

               
Cow position:
               
chr21:10032063-10032261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
8-217
               

               
Cow position:
               
chr21:28642102-28641884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
73, 8
               

               
Conread position:
               
8-218
               

               
Cow position:
               
chr21:20588737-20588951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 0
               

               
Conread position:
               
8-243
               

               
Cow position:
               
chr21:31512235-31511997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
143, 111
               

               
Conread position:
               
8-252
               

               
Cow position:
               
chr21:26852962-26853211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
8-252
               

               
Cow position:
               
chr21:44755071-44754823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
127, 86
               

               
Conread position:
               
8-252
               

               
Cow position:
               
chr21:46462896-46463144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
127, 61
               

               
Conread position:
               
8-256
               

               
Cow position:
               
chr21:26399749-26399496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 0
               

               
Conread position:
               
8-264
               

               
Cow position:
               
chr21:35899517-35899772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
93, 37
               

               
Conread position:
               
8-277
               

               
Cow position:
               
chr21:21975081-21975357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
128, 51
               

               
Conread position:
               
8-282
               

               
Cow position:
               
chr21:3818815-3819090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
143, 20
               

               
Conread position:
               
8-282
               

               
Cow position:
               
chr21:19698860-19698579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
150, 87
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr21:21964736-21965001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
171, 81
               

               
Conread position:
               
8-293
               

               
Cow position:
               
chr21:48108147-48107871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
128, 21
               

               
Conread position:
               
8-298
               

               
Cow position:
               
chr21:47649374-47649668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
143, 72
               

               
Conread position:
               
8-306
               

               
Cow position:
               
chr21:4189539-4189840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 6
               

               
Conread position:
               
8-306
               

               
Cow position:
               
chr21:42170337-42170640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
131, 42
               

               
Conread position:
               
8-331
               

               
Cow position:
               
chr21:46973429-46973101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
80, 176
               

               
Conread position:
               
8-339
               

               
Cow position:
               
chr21:18783976-18783647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
83, 15
               

               
Conread position:
               
8-363
               

               
Cow position:
               
chr21:37299171-37299521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 187
               

               
Conread position:
               
8-366
               

               
Cow position:
               
chr21:8126080-8125742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
171, 36
               

               
Conread position:
               
8-366
               

               
Cow position:
               
chr21:12961206-12960836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
103, 9
               

               
Conread position:
               
8-366
               

               
Cow position:
               
chr21:21480473-21480122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 122
               

               
Conread position:
               
8-372
               

               
Cow position:
               
chr21:13489349-13489714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 107
               

               
Conread position:
               
8-372
               

               
Cow position:
               
chr21:42905664-42905303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
174, 40
               

               
Conread position:
               
8-373
               

               
Cow position:
               
chr21:45866644-45867003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 29
               

               
Conread position:
               
8-378
               

               
Cow position:
               
chr21:16909761-16910134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
91, 138
               

               
Conread position:
               
8-382
               

               
Cow position:
               
chr21:2491084-2490709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
171, 331
               

               
Conread position:
               
9-119
               

               
Cow position:
               
chr21:19050780-19050670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
9-247
               

               
Cow position:
               
chr21:47745966-47745726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
170, 133
               

               
Conread position:
               
9-282
               

               
Cow position:
               
chr21:25173576-25173855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr21:937759-938015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
249, 78
               

               
Conread position:
               
9-306
               

               
Cow position:
               
chr21:32237007-32237299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 89
               

               
Conread position:
               
9-323
               

               
Cow position:
               
chr21:10726988-10727301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
211, 132
               

               
Conread position:
               
9-345
               

               
Cow position:
               
chr21:34010680-34010351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 60
               

               
Conread position:
               
9-364
               

               
Cow position:
               
chr21:5898686-5898341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
124, 19
               

               
Conread position:
               
9-372
               

               
Cow position:
               
chr21:28429157-28429509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
187, 72
               

               
Conread position:
               
9-378
               

               
Cow position:
               
chr21:11639728-11640095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 38
               

               
Conread position:
               
9-378
               

               
Cow position:
               
chr21:42384215-42384581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 82
               

               
Conread position:
               
10-204
               

               
Cow position:
               
chr21:17482467-17482658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
10-254
               

               
Cow position:
               
chr21:3614069-3614307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
165, 51
               

               
Conread position:
               
10-266
               

               
Cow position:
               
chr21:24864863-24865125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
10-286
               

               
Cow position:
               
chr21:18932200-18932472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
188, 120
               

               
Conread position:
               
10-316
               

               
Cow position:
               
chr21:2359600-2359904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
141, 128
               

               
Conread position:
               
10-364
               

               
Cow position:
               
chr21:36297187-36297553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 120
               

               
Conread position:
               
10-366
               

               
Cow position:
               
chr21:2679267-2679619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 77
               

               
Conread position:
               
10-366
               

               
Cow position:
               
chr21:36795308-36795665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 203
               

               
Conread position:
               
10-366
               

               
Cow position:
               
chr21:42914038-42913681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 195
               

               
Conread position:
               
10-373
               

               
Cow position:
               
chr21:13089769-13089399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
122, 27
               

               
Conread position:
               
10-378
               

               
Cow position:
               
chr21:25127318-25127677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 74
               

               
Conread position:
               
11-109
               

               
Cow position:
               
chr21:24703271-24703173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
11-138
               

               
Cow position:
               
chr21:49678697-49678570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
120, 32
               

               
Conread position:
               
11-177
               

               
Cow position:
               
chr21:1803045-1802879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
11-177
               

               
Cow position:
               
chr21:8274473-8274314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
11-200
               

               
Cow position:
               
chr21:5459687-5459494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
11-200
               

               
Cow position:
               
chr21:32814100-32813908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
169, 94
               

               
Conread position:
               
11-201
               

               
Cow position:
               
chr21:220671-220869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
11-205
               

               
Cow position:
               
chr21:5808712-5808514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
140, 127
               

               
Conread position:
               
11-210
               

               
Cow position:
               
chr21:33949961-33950161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
162, 142
               

               
Conread position:
               
11-242
               

               
Cow position:
               
chr21:38943946-38943724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
168, 69
               

               
Conread position:
               
11-247
               

               
Cow position:
               
chr21:25991361-25991121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
94, 64
               

               
Conread position:
               
11-251
               

               
Cow position:
               
chr21:876129-876372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
121, 47
               

               
Conread position:
               
11-252
               

               
Cow position:
               
chr21:26870583-26870830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
81, 206
               

               
Conread position:
               
11-295
               

               
Cow position:
               
chr21:2367049-2367327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
185, 171
               

               
Conread position:
               
11-306
               

               
Cow position:
               
chr21:81779-82083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 247
               

               
Conread position:
               
11-343
               

               
Cow position:
               
chr21:23821877-23822210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 138
               

               
Conread position:
               
11-344
               

               
Cow position:
               
chr21:393730-394062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 242
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr21:17479093-17479419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
187, 115
               

               
Conread position:
               
11-364
               

               
Cow position:
               
chr21:29069619-29069267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 92
               

               
Conread position:
               
11-366
               

               
Cow position:
               
chr21:11740422-11740057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 34
               

               
Conread position:
               
11-366
               

               
Cow position:
               
chr21:16612338-16612687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 180
               

               
Conread position:
               
12-134
               

               
Cow position:
               
chr21:36116045-36116162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
12-219
               

               
Cow position:
               
chr21:697275-697068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
139, 75
               

               
Conread position:
               
12-219
               

               
Cow position:
               
chr21:23293445-23293236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
170, 79
               

               
Conread position:
               
12-239
               

               
Cow position:
               
chr21:34591476-34591243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
12-267
               

               
Cow position:
               
chr21:37662216-37661949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
70, 262
               

               
Conread position:
               
12-281
               

               
Cow position:
               
chr21:15545655-15545390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
90, 120
               

               
Conread position:
               
12-283
               

               
Cow position:
               
chr21:14125773-14126029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
250, 119
               

               
Conread position:
               
12-290
               

               
Cow position:
               
chr21:28599480-28599764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 44
               

               
Conread position:
               
12-331
               

               
Cow position:
               
chr21:20107036-20106724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
119, 127
               

               
Conread position:
               
12-366
               

               
Cow position:
               
chr21:33983100-33982745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 242
               

               
Conread position:
               
13-138
               

               
Cow position:
               
chr21:41039929-41040054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
13-332
               

               
Cow position:
               
chr21:17414817-17414517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
249, 78
               

               
Conread position:
               
14-254
               

               
Cow position:
               
chr21:29253169-29252935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
165, 56
               

               
Conread position:
               
14-267
               

               
Cow position:
               
chr21:21919561-21919810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
108, 44
               

               
Conread position:
               
14-331
               

               
Cow position:
               
chr21:28998195-28997868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
90, 239
               

               
Conread position:
               
15-304
               

               
Cow position:
               
chr21:13751100-13751389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
50, 78
               

               
Conread position:
               
15-327
               

               
Cow position:
               
chr21:13728044-13727733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
248, 52
               

               
Conread position:
               
15-327
               

               
Cow position:
               
chr21:18934636-18934946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
181, 130
               

               
Conread position:
               
15-365
               

               
Cow position:
               
chr21:43357548-43357193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 122
               

               
Conread position:
               
15-366
               

               
Cow position:
               
chr21:5392825-5392474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 83
               

               
Conread position:
               
15-378
               

               
Cow position:
               
chr21:34653800-34654156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
181, 40
               

               
Conread position:
               
15-380
               

               
Cow position:
               
chr21:9711002-9710630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
44, 208
               

               
Conread position:
               
16-205
               

               
Cow position:
               
chr21:20377648-20377459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
163, 63
               

               
Conread position:
               
16-290
               

               
Cow position:
               
chr21:8888580-8888857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
163, 235
               

               
Conread position:
               
16-327
               

               
Cow position:
               
chr21:18568935-18568612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
42, 76
               

               
Conread position:
               
17-282
               

               
Cow position:
               
chr21:1457906-1457636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
162, 190
               

               
Conread position:
               
17-282
               

               
Cow position:
               
chr21:23309753-23310020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
7, 77
               

               
Conread position:
               
18-119
               

               
Cow position:
               
chr21:11705312-11705413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
18-251
               

               
Cow position:
               
chr21:36357841-36358076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
157, 107
               

               
Conread position:
               
18-257
               

               
Cow position:
               
chr21:21600944-21600701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
161, 181
               

               
Conread position:
               
18-358
               

               
Cow position:
               
chr21:23672462-23672803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
161, 90
               

               
Conread position:
               
18-366
               

               
Cow position:
               
chr21:28443645-28443311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
115, 56
               

               
Conread position:
               
19-146
               

               
Cow position:
               
chr21:14727765-14727891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
19-202
               

               
Cow position:
               
chr21:17205000-17204811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
80, 125
               

               
Conread position:
               
19-262
               

               
Cow position:
               
chr21:1991021-1991260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
79, 117
               

               
Conread position:
               
20-246
               

               
Cow position:
               
chr21:29954709-29954493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
20-297
               

               
Cow position:
               
chr21:4957472-4957190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
20-316
               

               
Cow position:
               
chr21:40108266-40107971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
159, 36
               

               
Conread position:
               
20-323
               

               
Cow position:
               
chr21:39889026-39888724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
241, 162
               

               
Conread position:
               
20-378
               

               
Cow position:
               
chr21:30607385-30607014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
76, 206
               

               
Conread position:
               
21-215
               

               
Cow position:
               
chr21:46626788-46626997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
70, 46
               

               
Conread position:
               
21-276
               

               
Cow position:
               
chr21:1529509-1529257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
150, 80
               

               
Conread position:
               
21-282
               

               
Cow position:
               
chr21:33632730-33632464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
21-298
               

               
Cow position:
               
chr21:9212318-9212597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
158, 41
               

               
Conread position:
               
21-366
               

               
Cow position:
               
chr21:10882145-10882505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
87, 336
               

               
Conread position:
               
21-366
               

               
Cow position:
               
chr21:44108728-44109065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
158, 85
               

               
Conread position:
               
21-373
               

               
Cow position:
               
chr21:22855938-22856290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 92
               

               
Conread position:
               
22-119
               

               
Cow position:
               
chr21:42136130-42136034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
22-138
               

               
Cow position:
               
chr21:6862959-6862843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
22-282
               

               
Cow position:
               
chr21:39418302-39418561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
157, 19
               

               
Conread position:
               
22-344
               

               
Cow position:
               
chr21:36793602-36793937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
117, 215
               

               
Conread position:
               
22-366
               

               
Cow position:
               
chr21:26648284-26647946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 103
               

               
Conread position:
               
23-293
               

               
Cow position:
               
chr21:42023856-42024113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
159, 84
               

               
Conread position:
               
23-295
               

               
Cow position:
               
chr21:39822089-39821812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
23-322
               

               
Cow position:
               
chr21:33562735-33563033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
72, 102
               

               
Conread position:
               
23-343
               

               
Cow position:
               
chr21:23801399-23801084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
232, 44
               

               
Conread position:
               
24-242
               

               
Cow position:
               
chr21:8546495-8546268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
71, 112
               

               
Conread position:
               
24-251
               

               
Cow position:
               
chr21:39313447-39313223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
225, 114
               

               
Conread position:
               
24-269
               

               
Cow position:
               
chr21:20109110-20108861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
47, 19
               

               
Conread position:
               
24-305
               

               
Cow position:
               
chr21:13718138-13717854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
47, 230
               

               
Conread position:
               
24-305
               

               
Cow position:
               
chr21:17709550-17709831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
158, 81
               

               
Conread position:
               
24-306
               

               
Cow position:
               
chr21:17419819-17419538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
158, 194
               

               
Conread position:
               
24-373
               

               
Cow position:
               
chr21:17511501-17511845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 45
               

               
Conread position:
               
25-282
               

               
Cow position:
               
chr21:17643240-17642984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
157, 79
               

               
Conread position:
               
28-254
               

               
Cow position:
               
chr21:32829169-32828943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
103, 31
               

               
Conread position:
               
28-295
               

               
Cow position:
               
chr21:35919314-35919586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
28-306
               

               
Cow position:
               
chr21:10966959-10967238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
151, 163
               

               
Conread position:
               
28-372
               

               
Cow position:
               
chr21:41155588-41155933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 94
               

               
Conread position:
               
29-202
               

               
Cow position:
               
chr21:43251850-43251673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
29-282
               

               
Cow position:
               
chr21:25282060-25281815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
122, 35
               

               
Conread position:
               
29-289
               

               
Cow position:
               
chr21:41040592-41040859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
73, 239
               

               
Conread position:
               
29-295
               

               
Cow position:
               
chr21:32356627-32356357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
150, 179
               

               
Conread position:
               
29-316
               

               
Cow position:
               
chr21:27336549-27336840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
150, 275
               

               
Conread position:
               
29-378
               

               
Cow position:
               
chr21:5482478-5482831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
150, 201
               

               
Conread position:
               
30-202
               

               
Cow position:
               
chr21:5985027-5985202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
149, 63
               

               
Conread position:
               
30-373
               

               
Cow position:
               
chr21:44114402-44114061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
51, 108
               

               
Conread position:
               
31-347
               

               
Cow position:
               
chr21:17417034-17416714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
39, 195
               

               
Conread position:
               
33-204
               

               
Cow position:
               
chr21:16230833-16231007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
143, 96
               

               
Conread position:
               
33-282
               

               
Cow position:
               
chr21:36857360-36857607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
12, 74
               

               
Conread position:
               
33-345
               

               
Cow position:
               
chr21:17434589-17434274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
37, 61
               

               
Conread position:
               
33-351
               

               
Cow position:
               
chr21:41957443-41957124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 158
               

               
Conread position:
               
33-380
               

               
Cow position:
               
chr21:16188064-16187732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
149, 34
               

               
Conread position:
               
34-253
               

               
Cow position:
               
chr21:16166901-16166682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
145, 160
               

               
Conread position:
               
34-282
               

               
Cow position:
               
chr21:4812001-4811752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
145, 87
               

               
Conread position:
               
35-134
               

               
Cow position:
               
chr21:15586601-15586502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
36-254
               

               
Cow position:
               
chr21:14464299-14464531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
44, 116
               

               
Conread position:
               
36-382
               

               
Cow position:
               
chr21:30650793-30650444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
143, 301
               

               
Conread position:
               
37-201
               

               
Cow position:
               
chr21:14462035-14461867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
37-289
               

               
Cow position:
               
chr21:26241563-26241815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
127, 43
               

               
Conread position:
               
37-321
               

               
Cow position:
               
chr21:13756294-13756584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
145, 93
               

               
Conread position:
               
38-339
               

               
Cow position:
               
chr21:33350481-33350780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 53
               

               
Conread position:
               
38-372
               

               
Cow position:
               
chr21:15867051-15867375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
225, 53
               

               
Conread position:
               
39-253
               

               
Cow position:
               
chr21:36819486-36819262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
39-254
               

               
Cow position:
               
chr21:14383973-14384186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
155, 131
               

               
Conread position:
               
39-262
               

               
Cow position:
               
chr21:3239046-3239267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
94, 61
               

               
Conread position:
               
39-293
               

               
Cow position:
               
chr21:18935503-18935752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
143, 34
               

               
Conread position:
               
40-366
               

               
Cow position:
               
chr21:3585618-3585306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
222, 79
               

               
Conread position:
               
40-378
               

               
Cow position:
               
chr21:44252090-44251770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
64, 180
               

               
Conread position:
               
41-208
               

               
Cow position:
               
chr21:49646436-49646262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 92
               

               
Conread position:
               
41-295
               

               
Cow position:
               
chr21:34877538-34877280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
138, 15
               

               
Conread position:
               
41-306
               

               
Cow position:
               
chr21:13035310-13035040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
100, 235
               

               
Conread position:
               
41-366
               

               
Cow position:
               
chr21:6713800-6713463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
9, 183
               

               
Conread position:
               
42-289
               

               
Cow position:
               
chr21:21223024-21223280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
56, 95
               

               
Conread position:
               
43-276
               

               
Cow position:
               
chr21:35395547-35395307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
49, 96
               

               
Conread position:
               
43-293
               

               
Cow position:
               
chr21:20329084-20329337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
110, 54
               

               
Conread position:
               
43-293
               

               
Cow position:
               
chr21:39403797-39403545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
139, 87
               

               
Conread position:
               
43-378
               

               
Cow position:
               
chr21:5971095-5970765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
131, 86
               

               
Conread position:
               
44-364
               

               
Cow position:
               
chr21:44826133-44825829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
136, 31
               

               
Conread position:
               
44-373
               

               
Cow position:
               
chr21:23150277-23149950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
159, 86
               

               
Conread position:
               
46-282
               

               
Cow position:
               
chr21:19070845-19070602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
47-332
               

               
Cow position:
               
chr21:49700292-49700003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 165
               

               
Conread position:
               
48-246
               

               
Cow position:
               
chr21:30859119-30859316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
131, 82
               

               
Conread position:
               
48-253
               

               
Cow position:
               
chr21:34011358-34011144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
50-295
               

               
Cow position:
               
chr21:25184041-25183792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
129, 170
               

               
Conread position:
               
50-357
               

               
Cow position:
               
chr21:42939974-42940281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
94, 99
               

               
Conread position:
               
53-282
               

               
Cow position:
               
chr21:4267599-4267365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
98, 85
               

               
Conread position:
               
53-282
               

               
Cow position:
               
chr21:17049343-17049570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
47, 79
               

               
Conread position:
               
53-306
               

               
Cow position:
               
chr21:19977086-19977337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
129, 29
               

               
Conread position:
               
53-366
               

               
Cow position:
               
chr21:10151546-10151867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
129, 77
               

               
Conread position:
               
56-289
               

               
Cow position:
               
chr21:24348418-24348652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
123, 216
               

               
Conread position:
               
57-316
               

               
Cow position:
               
chr21:8235267-8235017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
192, 94
               

               
Conread position:
               
58-254
               

               
Cow position:
               
chr21:28919867-28919670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
79, 40
               

               
Conread position:
               
58-306
               

               
Cow position:
               
chr21:13410067-13409820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
124, 158
               

               
Conread position:
               
58-326
               

               
Cow position:
               
chr21:5636965-5636691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 145
               

               
Conread position:
               
58-327
               

               
Cow position:
               
chr21:23322325-23322050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
124, 72
               

               
Conread position:
               
60-219
               

               
Cow position:
               
chr21:29015131-29014972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
122, 28
               

               
Conread position:
               
61-267
               

               
Cow position:
               
chr21:37538871-37538661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
118, 208
               

               
Conread position:
               
61-295
               

               
Cow position:
               
chr21:41235952-41235713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
118, 220
               

               
Conread position:
               
61-300
               

               
Cow position:
               
chr21:38917977-38918214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
127, 30
               

               
Conread position:
               
62-293
               

               
Cow position:
               
chr21:1483252-1483484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
120, 25
               

               
Conread position:
               
62-372
               

               
Cow position:
               
chr21:40899096-40899407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 243
               

               
Conread position:
               
64-263
               

               
Cow position:
               
chr21:17948163-17947959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
115, 143
               

               
Conread position:
               
64-266
               

               
Cow position:
               
chr21:28907890-28907683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
34, 114
               

               
Conread position:
               
64-306
               

               
Cow position:
               
chr21:11114467-11114714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
66-295
               

               
Cow position:
               
chr21:30153078-30152843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
66-366
               

               
Cow position:
               
chr21:27569400-27569107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
45, 70
               

               
Conread position:
               
67-231
               

               
Cow position:
               
chr21:30257939-30257771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
69-225
               

               
Cow position:
               
chr21:5203455-5203612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
110, 19
               

               
Conread position:
               
69-341
               

               
Cow position:
               
chr21:33489-33764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
9, 21
               

               
Conread position:
               
71-303
               

               
Cow position:
               
chr21:42348909-42348673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
111, 182
               

               
Conread position:
               
71-306
               

               
Cow position:
               
chr21:27124359-27124122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
61, 137
               

               
Conread position:
               
71-347
               

               
Cow position:
               
chr21:15445310-15445026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
111, 154
               

               
Conread position:
               
71-366
               

               
Cow position:
               
chr21:41878245-41878533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
111, 101
               

               
Conread position:
               
72-175
               

               
Cow position:
               
chr21:19562962-19563065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
72-263
               

               
Cow position:
               
chr21:26480673-26480868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
107, 47
               

               
Conread position:
               
72-323
               

               
Cow position:
               
chr21:9278138-9278405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
73-363
               

               
Cow position:
               
chr21:8351530-8351252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
109, 28
               

               
Conread position:
               
74-282
               

               
Cow position:
               
chr21:30059672-30059459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
76-253
               

               
Cow position:
               
chr21:11877158-11877334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
103, 71
               

               
Conread position:
               
81-289
               

               
Cow position:
               
chr21:13316161-13316371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
8, 154
               

               
Conread position:
               
82-291
               

               
Cow position:
               
chr21:24797475-24797676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
105, 48
               

               
Conread position:
               
82-295
               

               
Cow position:
               
chr21:18781620-18781841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
82-303
               

               
Cow position:
               
chr21:48251250-48251026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
94, 183
               

               
Conread position:
               
82-366
               

               
Cow position:
               
chr21:28626021-28626304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
100, 66
               

               
Conread position:
               
82-372
               

               
Cow position:
               
chr21:17936148-17936440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
27, 258
               

               
Conread position:
               
83-293
               

               
Cow position:
               
chr21:10866656-10866870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
77, 183
               

               
Conread position:
               
84-262
               

               
Cow position:
               
chr21:8974002-8974185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
84-373
               

               
Cow position:
               
chr21:31676284-31676568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
97, 21
               

               
Conread position:
               
85-267
               

               
Cow position:
               
chr21:37282092-37282274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
94, 126
               

               
Conread position:
               
85-365
               

               
Cow position:
               
chr21:30592515-30592243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
168, 31
               

               
Conread position:
               
85-380
               

               
Cow position:
               
chr21:31662243-31662542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
96, 166
               

               
Conread position:
               
88-298
               

               
Cow position:
               
chr21:43272068-43271853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 50
               

               
Conread position:
               
89-306
               

               
Cow position:
               
chr21:13303606-13303823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
164, 103
               

               
Conread position:
               
89-365
               

               
Cow position:
               
chr21:23535500-23535772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
37, 92
               

               
Conread position:
               
89-380
               

               
Cow position:
               
chr21:32665987-32665700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
91-366
               

               
Cow position:
               
chr21:13365130-13365405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 123
               

               
Conread position:
               
93-267
               

               
Cow position:
               
chr21:43300866-43300688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
86, 60
               

               
Conread position:
               
97-290
               

               
Cow position:
               
chr21:19436322-19436130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
79, 40
               

               
Conread position:
               
97-366
               

               
Cow position:
               
chr21:19258621-19258884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
85, 111
               

               
Conread position:
               
97-369
               

               
Cow position:
               
chr21:3498293-3498559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
124, 115
               

               
Conread position:
               
98-262
               

               
Cow position:
               
chr21:47215385-47215222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 113
               

               
Conread position:
               
98-306
               

               
Cow position:
               
chr21:24094948-24094744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
155, 83
               

               
Conread position:
               
98-327
               

               
Cow position:
               
chr21:40133951-40134187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
53, 154
               

               
Conread position:
               
98-330
               

               
Cow position:
               
chr21:2927407-2927171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 44
               

               
Conread position:
               
98-330
               

               
Cow position:
               
chr21:3818012-3818241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
149, 84
               

               
Conread position:
               
98-332
               

               
Cow position:
               
chr21:6051302-6051538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
84, 127
               

               
Conread position:
               
98-343
               

               
Cow position:
               
chr21:8618070-8618324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
81, 118
               

               
Conread position:
               
98-366
               

               
Cow position:
               
chr21:1058873-1059141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
84, 31
               

               
Conread position:
               
98-366
               

               
Cow position:
               
chr21:29484780-29485044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
98-368
               

               
Cow position:
               
chr21:22860798-22861066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
159, 39
               

               
Conread position:
               
98-373
               

               
Cow position:
               
chr21:41620915-41621194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
84, 169
               

               
Conread position:
               
99-253
               

               
Cow position:
               
chr21:24758866-24759023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
77, 137
               

               
Conread position:
               
99-293
               

               
Cow position:
               
chr21:4276797-4276599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
35, 156
               

               
Conread position:
               
99-305
               

               
Cow position:
               
chr21:45355633-45355839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
80, 111
               

               
Conread position:
               
99-324
               

               
Cow position:
               
chr21:45330811-45330576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
99-364
               

               
Cow position:
               
chr21:24598456-24598718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
38, 106
               

               
Conread position:
               
99-366
               

               
Cow position:
               
chr21:12801947-12801687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
83, 32
               

               
Conread position:
               
99-366
               

               
Cow position:
               
chr21:18828512-18828240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
83, 38
               

               
Conread position:
               
99-366
               

               
Cow position:
               
chr21:29002365-29002093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
83, 154
               

               
Conread position:
               
99-366
               

               
Cow position:
               
chr21:41579548-41579818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
83, 32
               

               
Conread position:
               
99-372
               

               
Cow position:
               
chr21:8549478-8549750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
80, 23
               

               
Conread position:
               
100-331
               

               
Cow position:
               
chr21:41597613-41597853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
100-332
               

               
Cow position:
               
chr21:13850274-13850032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
8, 52
               

               
Conread position:
               
101-332
               

               
Cow position:
               
chr21:27521526-27521299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
81, 30
               

               
Conread position:
               
101-372
               

               
Cow position:
               
chr21:9310842-9311114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
43, 29
               

               
Conread position:
               
102-362
               

               
Cow position:
               
chr21:42145716-42145977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
32, 109
               

               
Conread position:
               
104-285
               

               
Cow position:
               
chr21:35897289-35897465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
78, 7
               

               
Conread position:
               
104-365
               

               
Cow position:
               
chr21:3361212-3360952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
80, 33
               

               
Conread position:
               
105-306
               

               
Cow position:
               
chr21:46242436-46242233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
76, 32
               

               
Conread position:
               
106-366
               

               
Cow position:
               
chr21:21077133-21077388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
22, 69
               

               
Conread position:
               
106-366
               

               
Cow position:
               
chr21:39450364-39450099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
106-366
               

               
Cow position:
               
chr21:42135820-42135554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
76, 147
               

               
Conread position:
               
107-262
               

               
Cow position:
               
chr21:42465634-42465792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
72, 139
               

               
Conread position:
               
107-328
               

               
Cow position:
               
chr21:9998916-9998687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
13, 31
               

               
Conread position:
               
107-366
               

               
Cow position:
               
chr21:23568013-23568286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
52, 205
               

               
Conread position:
               
108-293
               

               
Cow position:
               
chr21:31277627-31277813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
71, 41
               

               
Conread position:
               
108-324
               

               
Cow position:
               
chr21:31253341-31253569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
109-266
               

               
Cow position:
               
chr21:37208302-37208142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
109-280
               

               
Cow position:
               
chr21:9334452-9334282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
148, 82
               

               
Conread position:
               
109-295
               

               
Cow position:
               
chr21:9303954-9303770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
70, 100
               

               
Conread position:
               
109-298
               

               
Cow position:
               
chr21:10118360-10118555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
109-300
               

               
Cow position:
               
chr21:13163700-13163889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
73, 38
               

               
Conread position:
               
109-306
               

               
Cow position:
               
chr21:29979950-29979753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
9, 73
               

               
Conread position:
               
109-366
               

               
Cow position:
               
chr21:38449645-38449383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
73, 117
               

               
Conread position:
               
109-373
               

               
Cow position:
               
chr21:3763930-3763673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
73, 16
               

               
Conread position:
               
110-339
               

               
Cow position:
               
chr21:47860996-47861236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 105
               

               
Conread position:
               
110-365
               

               
Cow position:
               
chr21:45850902-45850648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
72, 27
               

               
Conread position:
               
110-366
               

               
Cow position:
               
chr21:10601560-10601313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
154, 27
               

               
Conread position:
               
110-373
               

               
Cow position:
               
chr21:17193952-17193682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
72, 101
               

               
Conread position:
               
111-296
               

               
Cow position:
               
chr21:32559545-32559367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
150, 71
               

               
Conread position:
               
111-303
               

               
Cow position:
               
chr21:40065506-40065313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
21, 69
               

               
Conread position:
               
111-366
               

               
Cow position:
               
chr21:5426755-5427002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
85, 16
               

               
Conread position:
               
112-337
               

               
Cow position:
               
chr21:33791558-33791328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
95, 70
               

               
Conread position:
               
113-306
               

               
Cow position:
               
chr21:47764301-47764111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
103, 27
               

               
Conread position:
               
113-382
               

               
Cow position:
               
chr21:14452041-14452311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
114-366
               

               
Cow position:
               
chr21:40589671-40589422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
68, 139
               

               
Conread position:
               
114-366
               

               
Cow position:
               
chr21:47465309-47465056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
68, 93
               

               
Conread position:
               
115-313
               

               
Cow position:
               
chr21:28027616-28027818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
64, 95
               

               
Conread position:
               
115-318
               

               
Cow position:
               
chr21:4268686-4268892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
117-365
               

               
Cow position:
               
chr21:18842423-18842176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 136
               

               
Conread position:
               
118-366
               

               
Cow position:
               
chr21:15610971-15611207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 13
               

               
Conread position:
               
119-366
               

               
Cow position:
               
chr21:28190845-28191096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
59, 134
               

               
Conread position:
               
120-366
               

               
Cow position:
               
chr21:15911218-15911465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
76, 71
               

               
Conread position:
               
121-274
               

               
Cow position:
               
chr21:802475-802323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
137, 65
               

               
Conread position:
               
121-283
               

               
Cow position:
               
chr21:9990333-9990497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
61, 42
               

               
Conread position:
               
122-330
               

               
Cow position:
               
chr21:17183741-17183954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
15, 28
               

               
Conread position:
               
124-373
               

               
Cow position:
               
chr21:27146172-27145923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
13, 88
               

               
Conread position:
               
125-331
               

               
Cow position:
               
chr21:18790733-18790527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
137, 66
               

               
Conread position:
               
127-369
               

               
Cow position:
               
chr21:41198586-41198334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
55, 221
               

               
Conread position:
               
134-346
               

               
Cow position:
               
chr21:27624544-27624759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
128, 29
               

               
Conread position:
               
150-366
               

               
Cow position:
               
chr21:24642366-24642583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 42
               

               
Conread position:
               
157-365
               

               
Cow position:
               
chr21:957521-957734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
5, 123
               

               
Conread position:
               
161-366
               

               
Cow position:
               
chr21:29978903-29978698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
21, 6
               

               
Conread position:
               
164-380
               

               
Cow position:
               
chr21:11359899-11360111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
18, 67
               

               
Conread position:
               
164-380
               

               
Cow position:
               
chr21:12462109-12461892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 48
               

               
Conread position:
               
180-364
               

               
Cow position:
               
chr21:17856425-17856604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
122, 69
               

               
Conread position:
               
181-365
               

               
Cow position:
               
chr21:20152830-20153017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
71, 23
               

               
Conread position:
               
182-384
               

               
Cow position:
               
chr21:36789677-36789876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
124, 67
               
Show alignments to all cow chromosomes.