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Cow genome map

           
Conread name:
           
Ss1.1-rcol1026b_k12.5
        

               
Conread position:
               
15-202
               

               
Cow position:
               
chrX:4043766-4043942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
7, 15
               

               
Conread position:
               
19-185
               

               
Cow position:
               
chrX:18999985-18999818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
11, 22
               

               
Conread position:
               
23-192
               

               
Cow position:
               
chrX:29194321-29194156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
35, 7
               

               
Conread position:
               
23-203
               

               
Cow position:
               
chrX:21004776-21004593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
24-151
               

               
Cow position:
               
chrX:4645823-4645948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
25-203
               

               
Cow position:
               
chrX:20168649-20168469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
16, 5
               

               
Conread position:
               
25-203
               

               
Cow position:
               
chrX:32821119-32820941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
16, 5
               

               
Conread position:
               
28-203
               

               
Cow position:
               
chrX:11084974-11085145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 89
               

               
Conread position:
               
30-163
               

               
Cow position:
               
chrX:19943149-19943286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
30-194
               

               
Cow position:
               
chrX:7646338-7646176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
11, 83
               

               
Conread position:
               
30-194
               

               
Cow position:
               
chrX:42171207-42171376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
30-203
               

               
Cow position:
               
chrX:33000992-33000814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
30-203
               

               
Cow position:
               
chrX:41166879-41167053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
85, 13
               

               
Conread position:
               
33-194
               

               
Cow position:
               
chrX:28106001-28105840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
29, 83
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chrX:17949413-17949571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
86, 54
               

               
Conread position:
               
36-197
               

               
Cow position:
               
chrX:1572060-1572220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
119, 80
               

               
Conread position:
               
36-197
               

               
Cow position:
               
chrX:39558269-39558433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
37-197
               

               
Cow position:
               
chrX:42235446-42235611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
37-206
               

               
Cow position:
               
chrX:12290797-12290634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
162, 74
               

               
Conread position:
               
37-210
               

               
Cow position:
               
chrX:33204891-33205060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
118, 79
               

               
Conread position:
               
39-193
               

               
Cow position:
               
chrX:41123135-41122989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
40-205
               

               
Cow position:
               
chrX:10831415-10831585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
43-153
               

               
Cow position:
               
chrX:29553357-29553247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
76, 100
               

               
Conread position:
               
43-194
               

               
Cow position:
               
chrX:7571977-7571823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
43-203
               

               
Cow position:
               
chrX:169474-169628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
112, 24
               

               
Conread position:
               
43-203
               

               
Cow position:
               
chrX:40648057-40647897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
112, 13
               

               
Conread position:
               
47-202
               

               
Cow position:
               
chrX:13868770-13868615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
68, 42
               

               
Conread position:
               
47-203
               

               
Cow position:
               
chrX:27119765-27119611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
47-203
               

               
Cow position:
               
chrX:29723808-29723653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
89, 69
               

               
Conread position:
               
47-208
               

               
Cow position:
               
chrX:45883904-45884069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
72, 118
               

               
Conread position:
               
49-203
               

               
Cow position:
               
chrX:36356178-36356026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
106, 80
               

               
Conread position:
               
50-180
               

               
Cow position:
               
chrX:15820661-15820531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
6, 73
               

               
Conread position:
               
50-197
               

               
Cow position:
               
chrX:29549480-29549630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
51-191
               

               
Cow position:
               
chrX:3130636-3130498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
51-197
               

               
Cow position:
               
chrX:7722056-7721906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
51-197
               

               
Cow position:
               
chrX:19003361-19003217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
104, 67
               

               
Conread position:
               
51-202
               

               
Cow position:
               
chrX:35413678-35413532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
104, 34
               

               
Conread position:
               
51-202
               

               
Cow position:
               
chrX:47054457-47054615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
51-203
               

               
Cow position:
               
chrX:5900530-5900380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
104, 67
               

               
Conread position:
               
51-203
               

               
Cow position:
               
chrX:17662531-17662682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
104, 63
               

               
Conread position:
               
51-203
               

               
Cow position:
               
chrX:18694863-18695013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
104, 65
               

               
Conread position:
               
51-208
               

               
Cow position:
               
chrX:11614762-11614605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
104, 69
               

               
Conread position:
               
51-208
               

               
Cow position:
               
chrX:20881875-20882031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
52-174
               

               
Cow position:
               
chrX:44703011-44703132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
71, 52
               

               
Conread position:
               
52-191
               

               
Cow position:
               
chrX:13136169-13136309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
52-193
               

               
Cow position:
               
chrX:3580007-3579867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
52-193
               

               
Cow position:
               
chrX:41270923-41271077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
52-194
               

               
Cow position:
               
chrX:7162122-7161980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
70, 99
               

               
Conread position:
               
52-194
               

               
Cow position:
               
chrX:12095709-12095853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
37, 83
               

               
Conread position:
               
52-194
               

               
Cow position:
               
chrX:12309323-12309465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
103, 92
               

               
Conread position:
               
52-194
               

               
Cow position:
               
chrX:24365758-24365905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
52-194
               

               
Cow position:
               
chrX:31250451-31250307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
52-197
               

               
Cow position:
               
chrX:24287870-24288008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
52-197
               

               
Cow position:
               
chrX:26625608-26625753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
61, 118
               

               
Conread position:
               
52-203
               

               
Cow position:
               
chrX:4269001-4269150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 68
               

               
Conread position:
               
52-203
               

               
Cow position:
               
chrX:12018355-12018203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
67, 81
               

               
Conread position:
               
52-203
               

               
Cow position:
               
chrX:19188994-19188849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
103, 58
               

               
Conread position:
               
52-203
               

               
Cow position:
               
chrX:20697546-20697693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
52-203
               

               
Cow position:
               
chrX:21593350-21593199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
103, 64
               

               
Conread position:
               
52-203
               

               
Cow position:
               
chrX:25035319-25035468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
103, 68
               

               
Conread position:
               
52-203
               

               
Cow position:
               
chrX:27771903-27772050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
103, 14
               

               
Conread position:
               
52-203
               

               
Cow position:
               
chrX:42507585-42507726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
52-203
               

               
Cow position:
               
chrX:43730161-43730307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
52-203
               

               
Cow position:
               
chrX:45875455-45875301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
103, 64
               

               
Conread position:
               
52-203
               

               
Cow position:
               
chrX:46433554-46433402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
103, 69
               

               
Conread position:
               
52-203
               

               
Cow position:
               
chrX:46587885-46587731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
52-204
               

               
Cow position:
               
chrX:16416572-16416418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
74, 46
               

               
Conread position:
               
52-204
               

               
Cow position:
               
chrX:42492460-42492603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
103, 64
               

               
Conread position:
               
52-205
               

               
Cow position:
               
chrX:1175919-1176071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
103, 64
               

               
Conread position:
               
52-205
               

               
Cow position:
               
chrX:26440719-26440871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
9, 60
               

               
Conread position:
               
52-205
               

               
Cow position:
               
chrX:44054865-44054714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
103, 60
               

               
Conread position:
               
52-207
               

               
Cow position:
               
chrX:6559385-6559538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
103, 59
               

               
Conread position:
               
52-207
               

               
Cow position:
               
chrX:12405318-12405476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
71, 63
               

               
Conread position:
               
52-207
               

               
Cow position:
               
chrX:22822109-22821957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
103, 58
               

               
Conread position:
               
52-208
               

               
Cow position:
               
chrX:11633745-11633586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
52-222
               

               
Cow position:
               
chrX:34554786-34554618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
105, 50
               

               
Conread position:
               
52-225
               

               
Cow position:
               
chrX:36866236-36866060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
63, 83
               

               
Conread position:
               
54-183
               

               
Cow position:
               
chrX:17301245-17301378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
54-188
               

               
Cow position:
               
chrX:11717722-11717862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
54-193
               

               
Cow position:
               
chrX:25815840-25815985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 80
               

               
Conread position:
               
54-193
               

               
Cow position:
               
chrX:34502981-34502843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
101, 57
               

               
Conread position:
               
54-194
               

               
Cow position:
               
chrX:41068786-41068641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
54-198
               

               
Cow position:
               
chrX:41238293-41238435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
101, 60
               

               
Conread position:
               
54-202
               

               
Cow position:
               
chrX:33640036-33639887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
59, 43
               

               
Conread position:
               
54-203
               

               
Cow position:
               
chrX:6265537-6265688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
66, 39
               

               
Conread position:
               
54-203
               

               
Cow position:
               
chrX:7710478-7710627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
100, 67
               

               
Conread position:
               
54-203
               

               
Cow position:
               
chrX:10516314-10516167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
57, 114
               

               
Conread position:
               
54-203
               

               
Cow position:
               
chrX:28878113-28878258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
81, 56
               

               
Conread position:
               
54-203
               

               
Cow position:
               
chrX:30133257-30133409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
54-203
               

               
Cow position:
               
chrX:38964169-38964015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
54-203
               

               
Cow position:
               
chrX:43527569-43527420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
101, 54
               

               
Conread position:
               
54-205
               

               
Cow position:
               
chrX:15815145-15814995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
104, 78
               

               
Conread position:
               
54-206
               

               
Cow position:
               
chrX:21327974-21327814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
54-207
               

               
Cow position:
               
chrX:27685309-27685153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
54-218
               

               
Cow position:
               
chrX:27261252-27261082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
58, 120
               

               
Conread position:
               
54-220
               

               
Cow position:
               
chrX:22914979-22915142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
101, 57
               

               
Conread position:
               
55-197
               

               
Cow position:
               
chrX:48044454-48044596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
100, 61
               

               
Conread position:
               
55-203
               

               
Cow position:
               
chrX:151965-151816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
38, 45
               

               
Conread position:
               
55-203
               

               
Cow position:
               
chrX:5679509-5679654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
55-203
               

               
Cow position:
               
chrX:37910505-37910357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
64, 96
               

               
Conread position:
               
55-205
               

               
Cow position:
               
chrX:35848624-35848469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
18, 7
               

               
Conread position:
               
55-207
               

               
Cow position:
               
chrX:31515233-31515075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
57-159
               

               
Cow position:
               
chrX:48664017-48663914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
57-174
               

               
Cow position:
               
chrX:23561915-23561801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
98, 54
               

               
Conread position:
               
57-174
               

               
Cow position:
               
chrX:27511486-27511367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
87, 69
               

               
Conread position:
               
57-179
               

               
Cow position:
               
chrX:43973603-43973479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
65, 44
               

               
Conread position:
               
57-183
               

               
Cow position:
               
chrX:29289636-29289510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
74, 56
               

               
Conread position:
               
57-189
               

               
Cow position:
               
chrX:42247124-42247261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
57-191
               

               
Cow position:
               
chrX:7351358-7351224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
98, 54
               

               
Conread position:
               
57-193
               

               
Cow position:
               
chrX:14599595-14599454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
52, 86
               

               
Conread position:
               
57-193
               

               
Cow position:
               
chrX:22466013-22465863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
57-193
               

               
Cow position:
               
chrX:38549505-38549368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
17, 61
               

               
Conread position:
               
57-193
               

               
Cow position:
               
chrX:47657444-47657306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
59, 95
               

               
Conread position:
               
57-194
               

               
Cow position:
               
chrX:7718907-7718776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
57-194
               

               
Cow position:
               
chrX:11454984-11455127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
57-194
               

               
Cow position:
               
chrX:15007091-15007229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
57-197
               

               
Cow position:
               
chrX:10411928-10412068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
98, 120
               

               
Conread position:
               
57-197
               

               
Cow position:
               
chrX:11589530-11589670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
98, 60
               

               
Conread position:
               
57-197
               

               
Cow position:
               
chrX:23562690-23562552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
57-197
               

               
Cow position:
               
chrX:27680456-27680316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
64, 117
               

               
Conread position:
               
57-197
               

               
Cow position:
               
chrX:38728792-38728655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
98, 41
               

               
Conread position:
               
57-197
               

               
Cow position:
               
chrX:41878872-41879015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
50, 117
               

               
Conread position:
               
57-202
               

               
Cow position:
               
chrX:6488637-6488489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
98, 59
               

               
Conread position:
               
57-202
               

               
Cow position:
               
chrX:34315577-34315434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
59, 96
               

               
Conread position:
               
57-202
               

               
Cow position:
               
chrX:45403767-45403915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
57-203
               

               
Cow position:
               
chrX:1499723-1499578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
57-203
               

               
Cow position:
               
chrX:5872375-5872232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
57-203
               

               
Cow position:
               
chrX:6234391-6234541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
57-203
               

               
Cow position:
               
chrX:6278440-6278589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
57-203
               

               
Cow position:
               
chrX:20790971-20790832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
98, 15
               

               
Conread position:
               
57-203
               

               
Cow position:
               
chrX:21566465-21566314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
57-203
               

               
Cow position:
               
chrX:27393968-27394109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
57-203
               

               
Cow position:
               
chrX:27705644-27705498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
61, 41
               

               
Conread position:
               
57-203
               

               
Cow position:
               
chrX:29121105-29120957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
57-203
               

               
Cow position:
               
chrX:29601770-29601919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
57-203
               

               
Cow position:
               
chrX:29680203-29680349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
98, 59
               

               
Conread position:
               
57-203
               

               
Cow position:
               
chrX:34441396-34441540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
59, 26
               

               
Conread position:
               
57-203
               

               
Cow position:
               
chrX:37489777-37489639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
57-203
               

               
Cow position:
               
chrX:38218772-38218621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
59, 103
               

               
Conread position:
               
57-203
               

               
Cow position:
               
chrX:38654372-38654519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
60, 122
               

               
Conread position:
               
57-203
               

               
Cow position:
               
chrX:42855516-42855366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
56, 102
               

               
Conread position:
               
57-203
               

               
Cow position:
               
chrX:45993286-45993134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 63
               

               
Conread position:
               
57-203
               

               
Cow position:
               
chrX:46072759-46072909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
57-204
               

               
Cow position:
               
chrX:31729500-31729351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
59, 76
               

               
Conread position:
               
57-204
               

               
Cow position:
               
chrX:33466667-33466519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
9, 74
               

               
Conread position:
               
57-204
               

               
Cow position:
               
chrX:34565344-34565191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
57-205
               

               
Cow position:
               
chrX:161470-161320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
69, 86
               

               
Conread position:
               
57-205
               

               
Cow position:
               
chrX:39220137-39219989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
77, 63
               

               
Conread position:
               
57-205
               

               
Cow position:
               
chrX:41027217-41027065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
57-206
               

               
Cow position:
               
chrX:40480811-40480963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
97, 63
               

               
Conread position:
               
57-206
               

               
Cow position:
               
chrX:44961809-44961654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
57-207
               

               
Cow position:
               
chrX:34222774-34222621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
57-207
               

               
Cow position:
               
chrX:37129327-37129174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
58, 106
               

               
Conread position:
               
57-210
               

               
Cow position:
               
chrX:46532437-46532598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
57-218
               

               
Cow position:
               
chrX:11082564-11082720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
57, 101
               

               
Conread position:
               
57-222
               

               
Cow position:
               
chrX:36514835-36515002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
58-194
               

               
Cow position:
               
chrX:37843776-37843643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
58-203
               

               
Cow position:
               
chrX:11856487-11856340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
64, 107
               

               
Conread position:
               
58-203
               

               
Cow position:
               
chrX:27228183-27228039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
97, 60
               

               
Conread position:
               
58-203
               

               
Cow position:
               
chrX:28134397-28134256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
97, 27
               

               
Conread position:
               
58-203
               

               
Cow position:
               
chrX:31489577-31489431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
60, 86
               

               
Conread position:
               
58-203
               

               
Cow position:
               
chrX:42994670-42994528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
97, 122
               

               
Conread position:
               
58-205
               

               
Cow position:
               
chrX:9365619-9365767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
37, 42
               

               
Conread position:
               
59-185
               

               
Cow position:
               
chrX:31294516-31294634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
95, 53
               

               
Conread position:
               
59-192
               

               
Cow position:
               
chrX:917312-917443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
96, 32
               

               
Conread position:
               
59-197
               

               
Cow position:
               
chrX:6690204-6690338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
96, 55
               

               
Conread position:
               
59-200
               

               
Cow position:
               
chrX:7277967-7277830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
87, 52
               

               
Conread position:
               
59-203
               

               
Cow position:
               
chrX:20339836-20339978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
90, 34
               

               
Conread position:
               
59-204
               

               
Cow position:
               
chrX:39938467-39938612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
96, 137
               

               
Conread position:
               
59-205
               

               
Cow position:
               
chrX:40680670-40680520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
60-177
               

               
Cow position:
               
chrX:25037042-25036924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
60-191
               

               
Cow position:
               
chrX:40283180-40283049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
97, 60
               

               
Conread position:
               
60-197
               

               
Cow position:
               
chrX:47481855-47481719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
95, 56
               

               
Conread position:
               
60-202
               

               
Cow position:
               
chrX:1514357-1514494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
95, 56
               

               
Conread position:
               
60-202
               

               
Cow position:
               
chrX:17888364-17888505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
94, 103
               

               
Conread position:
               
60-203
               

               
Cow position:
               
chrX:16348509-16348657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
60-203
               

               
Cow position:
               
chrX:36961696-36961554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
95, 56
               

               
Conread position:
               
60-204
               

               
Cow position:
               
chrX:28845888-28845738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
60-206
               

               
Cow position:
               
chrX:15147138-15147281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
95, 54
               

               
Conread position:
               
60-209
               

               
Cow position:
               
chrX:22387191-22387340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
95, 54
               

               
Conread position:
               
61-194
               

               
Cow position:
               
chrX:29487954-29488082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
61-197
               

               
Cow position:
               
chrX:38094462-38094604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
42, 61
               

               
Conread position:
               
61-202
               

               
Cow position:
               
chrX:23563737-23563878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
59, 71
               

               
Conread position:
               
62-202
               

               
Cow position:
               
chrX:13382384-13382242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
62-202
               

               
Cow position:
               
chrX:48243413-48243552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
97, 54
               

               
Conread position:
               
62-203
               

               
Cow position:
               
chrX:1615988-1616133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
62-203
               

               
Cow position:
               
chrX:8797309-8797164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
62-203
               

               
Cow position:
               
chrX:23513962-23514104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
57, 72
               

               
Conread position:
               
63-203
               

               
Cow position:
               
chrX:8925751-8925612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
93, 52
               

               
Conread position:
               
63-203
               

               
Cow position:
               
chrX:21672606-21672467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
92, 48
               

               
Conread position:
               
63-203
               

               
Cow position:
               
chrX:44397066-44396929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
91, 5
               

               
Conread position:
               
63-204
               

               
Cow position:
               
chrX:42461692-42461834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
63-204
               

               
Cow position:
               
chrX:42875035-42874894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
92, 53
               

               
Conread position:
               
64-197
               

               
Cow position:
               
chrX:5017360-5017497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
64-206
               

               
Cow position:
               
chrX:27516581-27516436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
64-206
               

               
Cow position:
               
chrX:35681393-35681246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
65-192
               

               
Cow position:
               
chrX:4515735-4515606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
65-194
               

               
Cow position:
               
chrX:15139497-15139625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
90, 46
               

               
Conread position:
               
65-202
               

               
Cow position:
               
chrX:42789670-42789533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
90, 51
               

               
Conread position:
               
65-207
               

               
Cow position:
               
chrX:8900077-8899937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
90, 50
               

               
Conread position:
               
66-194
               

               
Cow position:
               
chrX:47209395-47209266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
89, 54
               

               
Conread position:
               
67-197
               

               
Cow position:
               
chrX:45598555-45598684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
37, 32
               

               
Conread position:
               
67-203
               

               
Cow position:
               
chrX:20752303-20752166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
11, 56
               

               
Conread position:
               
68-203
               

               
Cow position:
               
chrX:10306722-10306586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
46, 53
               

               
Conread position:
               
68-208
               

               
Cow position:
               
chrX:41199155-41199013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
20, 89
               

               
Conread position:
               
70-202
               

               
Cow position:
               
chrX:29509393-29509529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 39
               

               
Conread position:
               
72-194
               

               
Cow position:
               
chrX:37750211-37750337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
72-197
               

               
Cow position:
               
chrX:17498128-17498002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
47, 72
               

               
Conread position:
               
72-203
               

               
Cow position:
               
chrX:36723046-36723179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
74-209
               

               
Cow position:
               
chrX:12116088-12115950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
75-203
               

               
Cow position:
               
chrX:37119636-37119505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
75-203
               

               
Cow position:
               
chrX:47756888-47757015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
80, 93
               

               
Conread position:
               
77-203
               

               
Cow position:
               
chrX:41743952-41743823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
78-203
               

               
Cow position:
               
chrX:44754623-44754745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
77, 9
               

               
Conread position:
               
79-203
               

               
Cow position:
               
chrX:26286017-26285893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 72
               

               
Conread position:
               
80-202
               

               
Cow position:
               
chrX:14973706-14973828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
75, 40
               

               
Conread position:
               
80-203
               

               
Cow position:
               
chrX:17908253-17908375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
42, 36
               

               
Conread position:
               
85-203
               

               
Cow position:
               
chrX:23497637-23497757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
87-203
               

               
Cow position:
               
chrX:25282987-25283103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
68, 28
               

               
Conread position:
               
87-203
               

               
Cow position:
               
chrX:35969058-35969175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 39
               

               
Conread position:
               
88-194
               

               
Cow position:
               
chrX:31252444-31252338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
67, 28
               

               
Conread position:
               
88-197
               

               
Cow position:
               
chrX:38439508-38439395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
95-203
               

               
Cow position:
               
chrX:32747703-32747595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
60, 21
               
Show alignments to all cow chromosomes.