Cow genome map

Conread name: Ss1.1-rcov33b_m10.5

Conread position: 237-390
Cow position: chr24:23556325-23556174 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 66, 28

Conread position: 256-412
Cow position: chr24:29524360-29524204 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 126
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 9, 64

Conread position: 264-397
Cow position: chr24:16089263-16089399 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 60, 112

Conread position: 264-397
Cow position: chr24:16510012-16510141 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 115
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 37, 69

Conread position: 264-398
Cow position: chr24:21656441-21656581 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 264-398
Cow position: chr24:39523414-39523279 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 112
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 37, 0

Conread position: 264-438
Cow position: chr24:29539895-29539721 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 37, 135

Conread position: 265-397
Cow position: chr24:7757808-7757939 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 110
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 36, 67

Conread position: 265-397
Cow position: chr24:27810193-27810319 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 43, 62

Conread position: 265-411
Cow position: chr24:44040969-44040832 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 267-387
Cow position: chr24:31816616-31816735 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 101
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 43, 103

Conread position: 267-387
Cow position: chr24:33098435-33098312 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 103
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 34, 0

Conread position: 267-387
Cow position: chr24:41916297-41916417 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 34, 55

Conread position: 267-387
Cow position: chr24:44987337-44987212 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 36, 0

Conread position: 267-391
Cow position: chr24:37252195-37252321 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 267-396
Cow position: chr24:5360754-5360880 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 34, 58

Conread position: 267-396
Cow position: chr24:34302001-34301868 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 39, 122

Conread position: 267-397
Cow position: chr24:2992843-2992710 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 113
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 34, 26

Conread position: 267-397
Cow position: chr24:4635130-4634995 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 267-397
Cow position: chr24:11028651-11028517 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 63, 0

Conread position: 267-397
Cow position: chr24:18324242-18324110 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 63, 20

Conread position: 267-397
Cow position: chr24:18474691-18474559 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 267-397
Cow position: chr24:18874783-18874650 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 25, 30

Conread position: 267-397
Cow position: chr24:24540453-24540322 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 34, 59

Conread position: 267-397
Cow position: chr24:28062986-28063120 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 34, 13

Conread position: 267-397
Cow position: chr24:28234080-28234211 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 34, 77

Conread position: 267-397
Cow position: chr24:30235908-30236042 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 34, 0

Conread position: 267-397
Cow position: chr24:41925860-41925986 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 108
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 34, 57

Conread position: 267-402
Cow position: chr24:33944439-33944583 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 34, 0

Conread position: 267-407
Cow position: chr24:18405243-18405099 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 35, 53

Conread position: 267-408
Cow position: chr24:1269821-1269957 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 34, 53

Conread position: 267-408
Cow position: chr24:27713367-27713230 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 34, 63

Conread position: 267-408
Cow position: chr24:39910995-39910851 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 36, 27

Conread position: 267-409
Cow position: chr24:3493922-3494061 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 38, 53

Conread position: 267-409
Cow position: chr24:17104532-17104392 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 121
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 36, 107

Conread position: 267-412
Cow position: chr24:2402330-2402195 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 267-412
Cow position: chr24:11840225-11840368 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 54, 97

Conread position: 267-412
Cow position: chr24:27202126-27202270 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 34, 65

Conread position: 267-413
Cow position: chr24:3165856-3166005 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 34, 117

Conread position: 267-413
Cow position: chr24:3404656-3404800 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 36, 59

Conread position: 267-413
Cow position: chr24:24136365-24136222 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 34, 72

Conread position: 267-417
Cow position: chr24:21834921-21834774 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 57, 0

Conread position: 267-419
Cow position: chr24:358402-358561 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 56, 138

Conread position: 267-419
Cow position: chr24:12120934-12121089 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 33, 137

Conread position: 267-419
Cow position: chr24:27906477-27906626 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 62, 89

Conread position: 267-420
Cow position: chr24:30483903-30483755 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 36, 57

Conread position: 267-420
Cow position: chr24:36554660-36554510 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 35, 59

Conread position: 267-420
Cow position: chr24:37651763-37651918 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 32, 58

Conread position: 267-420
Cow position: chr24:44776139-44775983 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 38, 148

Conread position: 267-421
Cow position: chr24:5141980-5142131 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 34, 56

Conread position: 267-421
Cow position: chr24:14551498-14551652 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 24, 120

Conread position: 267-421
Cow position: chr24:25122379-25122531 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 40, 0

Conread position: 267-424
Cow position: chr24:38006680-38006519 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 36, 140

Conread position: 267-427
Cow position: chr24:27719489-27719330 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 34, 63

Conread position: 267-431
Cow position: chr24:25947824-25947658 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 39, 137

Conread position: 267-433
Cow position: chr24:32891006-32890843 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 36, 70

Conread position: 267-436
Cow position: chr24:230321-230488 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 59

Conread position: 267-452
Cow position: chr24:30313988-30313804 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 34, 23

Conread position: 267-467
Cow position: chr24:18484958-18484756 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 155
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 55, 139

Conread position: 268-397
Cow position: chr24:34896660-34896531 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 33, 14

Conread position: 268-405
Cow position: chr24:15288866-15289004 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 16, 23

Conread position: 268-408
Cow position: chr24:5152562-5152706 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 36, 130

Conread position: 268-412
Cow position: chr24:28303316-28303179 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 33, 46

Conread position: 268-413
Cow position: chr24:15861555-15861404 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 268-420
Cow position: chr24:13727-13573 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 129, 39

Conread position: 269-397
Cow position: chr24:19763491-19763358 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 270-408
Cow position: chr24:27608065-27607929 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 129, 36

Conread position: 271-397
Cow position: chr24:6488250-6488374 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 30, 66

Conread position: 271-397
Cow position: chr24:19186979-19187102 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 110
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 30, 61

Conread position: 271-397
Cow position: chr24:27203502-27203623 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 21, 25

Conread position: 271-397
Cow position: chr24:27844486-27844363 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 30, 47

Conread position: 271-397
Cow position: chr24:30325739-30325612 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 271-397
Cow position: chr24:33372594-33372716 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 271-406
Cow position: chr24:28553522-28553394 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 271-415
Cow position: chr24:50406-50259 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 37, 55

Conread position: 271-416
Cow position: chr24:36286611-36286754 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 118
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 30, 129

Conread position: 273-397
Cow position: chr24:2223168-2223051 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 28, 52

Conread position: 273-397
Cow position: chr24:37974937-37974813 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 29, 52

Conread position: 273-408
Cow position: chr24:31160994-31160862 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 113
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 28, 47

Conread position: 273-412
Cow position: chr24:28256015-28255882 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 28, 53

Conread position: 276-396
Cow position: chr24:19637636-19637756 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 27, 48

Conread position: 276-397
Cow position: chr24:28721931-28722047 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 30, 54

Conread position: 276-397
Cow position: chr24:38693832-38693707 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 28, 92

Conread position: 276-397
Cow position: chr24:42175573-42175695 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 276-405
Cow position: chr24:22194466-22194592 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 276-436
Cow position: chr24:250491-250327 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 26, 128

Conread position: 276-436
Cow position: chr24:17309091-17308934 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 27, 56

Conread position: 276-443
Cow position: chr24:18750754-18750917 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 31, 128

Conread position: 281-420
Cow position: chr24:13231090-13231229 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 26, 93

Conread position: 285-397
Cow position: chr24:11208628-11208740 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 16, 66

Conread position: 285-397
Cow position: chr24:16994937-16995048 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 18, 47

Conread position: 288-397
Cow position: chr24:42792411-42792522 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 9, 0

Show alignments to all cow chromosomes.